Dear Amber users!
I'd like to compute of PMF along some coordinate specified transition of my
protein from the inactive R to the active R* form. I'll be thankful for
someone who could provide me with some tutorial with the guide for
calculations of the lowest minimum transition pathway between R and R*
provided in two pdbs and using it for the further PMF as some collective
variable (e.g combination of eigenvectors or something like this).
TFH,
James
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Received on Thu Jun 05 2014 - 04:30:02 PDT
