Thanks Jason for reply, I was really impatience. I will follow these
suggestions, if problem persists I will come to you again.
Thanks again
Regards
Kshatresh
On Wed, Jun 4, 2014 at 2:39 PM, Jason Swails <jason.swails.gmail.com> wrote:
> On Wed, 2014-06-04 at 08:07 +0300, Kshatresh Dutta Dubey wrote:
> > Dear users,
> >
> > I am still waiting for help.
>
> In all fairness, you have not been waiting long.
>
> > Is there no solution for mtkpp installation
> > problem?
>
> I tried building Amber with the same set of compilers (GCC 4.8.2) and I
> had no problems.
>
> The error message that is printed out in your build log is something
> along the lines of:
>
> /usr/include/boost/exception.hpp:9:2: error: #error The header
> <boost/exception.hpp> has been deprecated. Please #include
> <boost/exception/all.hpp> instead.
>
> What this means is that (for some reason) your install is not using the
> boost-1.38.0 bundled with AmberTools, but is instead using a much newer
> version of boost installed through your package manager.
>
> You can work around this particular error by following the advice given
> in the error message (i.e., change boost/exception.hpp to
> boost/exception/all.hpp in
> $AMBERHOME/AmberTools/src/mtkpp/src/Diagnostics/MTKException.h and
> $AMBERHOME/AmberTools/src/mtkpp/src/Parsers/parsingException.h).
>
> Then you can try again. If you get a different error, presumably
> related to the fact that your install is using the newer boost for some
> reason, there are a couple routes you can take:
>
> 1) Uninstall the system boost until you build Amber, then reinstall it
> 2) Keep following the instructions printed out in the error messages,
> using this email as an example.
> 3) Figure out why your compiler is resolving the system boost include
> (inside /usr/include) rather than the one in AmberTools/src/boost-1.38.0
> (my install is using the Amber-bundled boost); then fix that environment
> problem (this will require some investigation on your part seeing unless
> someone with some experience on this list is able to reproduce your
> problem).
>
> HTH,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
With best regards
************************************************************************************************
Dr. Kshatresh Dutta Dubey
Post Doctoral Researcher,
c/o Prof Sason Shaik,
Hebrew University of Jerusalem, Israel
Jerusalem, Israel
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jun 04 2014 - 05:00:04 PDT
