P=`pwd` export APBS_PREFIX=${P} export APBS_SRC=${P}/apbs export MCSH_HOME=/dev/null git clone git://git.code.sf.net/p/apbs/code apbs cd apbs git checkout 1d65213079ac5a25ca0b8108abda7f6707faa70c cd build cmake -DCMAKE_INSTALL_PREFIX:PATH=${APBS_PREFIX} -DENABLE_QUIET=ON \ -DBUILD_TOOLS=OFF -DENABLE_PYTHON=OFF -DENABLE_OPENMP=OFF \ -DENABLE_iAPBS=ON -DBUILD_WRAPPER=ON -DENABLE_MPI=OFF .. make install cd $AMBERHOME ./configure -noX11 --no-updates gnu make install cd $AMBERHOME/AmberTools/src/sander export APBS_LIBDIR=$APBS_PREFIX/lib export APBS_LIBS="-liapbs -lapbs_routines -lapbs_mg -lapbs_generic -lapbs_pmgc -lmaloc -lz" make clean make depend make -e AMBERBUILDFLAGS="-DAPBS" $AMBERHOME/bin/sander.APBS export TESTsander=${AMBERHOME}/bin/sander.APBS cd ${AMBERHOME}/test/iapbs_radi ./Run.ion.min