Dear Amber Users!
I'd like to perform simulation of the water-soluble protein in complex with
the small ligand where ligand is the cyclic nucleotide guanosine
monophosphate (cGMP). The output trajectory of this simulation will be
further processed by means of mmpbsa.py analysis. Could you suggest me the
reason amber's param sets for such ligand and protein as well as proper
tutorial for protein-ligand simulation?
Thanks for help,
James
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Received on Mon Apr 28 2014 - 05:30:03 PDT
