Dear Amber User,
I was trying to use the cluster command in cpptraj but each time it is
giving me different types of error. Most of the time I get this error
cluster out testclust representative pdb averagelinkage clusters 6\rms
Warning: No clustering algorithm specified; defaulting to 'hieragglo'
CLUSTER: Using coords dataset _DEFAULTCRD_, clustering using RMSD (all
atoms) best fit
Hierarchical Agglomerative: 6 clusters, average-linkage.
Cluster # vs time will be written to testclust
Warning: [cluster] Not all arguments handled: [ pdb ]
I want to know that if I am using the command correctly if not I want to
know more about the cluster command in cpptraj,
--
*A.Dutta (PPG INSTITUTE OF TECH ,MCA)*
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Received on Thu Apr 24 2014 - 15:30:02 PDT
