On Wed, Apr 23, 2014 at 7:24 PM, Soren Wacker <swacker.ucalgary.ca> wrote:
> Hi,
> OK, I will try the same with ambertools14.
>
> Acctually, I tried './update_amber --upgrade ' and './update_amber
> --update' just before I './configure gnu'.
>
The in-place upgrade mechanism is more designed for intermediate
AmberTools releases (e.g., AmberTools 13, AmberTools 15, etc.). The
changes in AmberTools 14 were a bit too much for the upgrade mechanism to
handle.
>
> Anyway, with ambertools14:
>
>
> ./configure gnu
> source amber.sh
>
> ...
> Installation of AmberTools14 serial is complete at Wed Apr 23 17:22:53 MDT
> 2014.
>
> make[1]: Leaving directory
> `/home/swacker/Programme/AmberTools14/amber14/AmberTools/src'
> ==============================================================
> /home/swacker/Programme/AmberTools14/amber14/src/Makefile not found, or
> -noamber was set.
> This is expected if you do not have Amber14.
> ==============================================================
>
> Seems, everthing is fine.
>
Awesome.
All the best,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Wed Apr 23 2014 - 19:30:03 PDT
