Dear Jason,
I found out that I missed three important steps. 1) I missed to load frcmod file, 2) Missed to insert "TER" between the lipids, especially the tryptophan and 3) numbering the trytophans. After correcting these, I could load it in xleap.
Thanks
Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
Malaysia
vjramana.gmail.com
On Thursday, 3 April 2014, 19:29, Jason Swails <jason.swails.gmail.com> wrote:
On Thu, 2014-04-03 at 07:20 +0100, Vijay Manickam Achari wrote:
> I am posting this again since this post did not appear in the mailing list. apologize for any inconvenience.
It appeared on the mailing list and was answered yesterday. Here is the
link where it has already appeared in the archive (the answer is the
"next in thread")
http://archive.ambermd.org/201404/0014.html
Please check your spam filters to make sure that emails to
"amber.ambermd.org" do not get thrown out.
All the best,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Apr 03 2014 - 21:30:02 PDT
