Hi,
I don't think there is currently any way to do this (simply) in Amber. You
could certainly think about either writing a program in NAB or something,
but all distance calculation routines are currently three dimensional.
-Dan
On Thu, Apr 3, 2014 at 1:35 PM, Jio M <jiomm.yahoo.com> wrote:
> Hi All
>
> I am wondering can we measure distances in one plane over whole trajectory
> in AMBER? I want to do some analysis with distances being measured by
> ignoring z dimension (that is first projecting all atoms in xy plane and
> then calculate distances for some analysis).
>
> best regards
> Jiom
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Thu Apr 03 2014 - 13:30:04 PDT
