What is it that you are trying to learn? Without defining that it is not
possible to suggest a method.
On Mar 26, 2014 6:40 AM, "Aditya Sarkar" <amlan.md.gmail.com> wrote:
> ---------- Forwarded message ----------
> From: Aditya Sarkar <amlan.md.gmail.com>
> Date: Wed, Mar 26, 2014 at 4:02 PM
> Subject: MMGBSA of protein DNA complex
> To: amber.ambermd.org
>
>
> Dear AMBER users,
>
> I am new to the MD simulation. It will be a great help if you kindly
> suggest me which GB model (IGB) should I used to in case MMGBSA calculation
> for protein-DNA complex?
>
> I am using MMPBSA.py and the default options.
>
> Looking forward for your reply and thanks in advance.
>
>
> Amlan
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Received on Wed Mar 26 2014 - 06:00:04 PDT
