Hi, Dan:
I use the ptraj of amber12.
Thank you
Li
On Fri, Mar 7, 2014 at 4:26 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Hi,
>
> Can you specify whether you were using ptraj or cpptraj, and which version
> (i.e. what is the output of './update_amber --version' in your AMBERHOME
> directory)?
>
> -Dan
>
>
> On Fri, Mar 7, 2014 at 4:18 PM, 肖立 <xiaoli19871216.gmail.com> wrote:
>
> > Hi,all:
> > I type the following code to do the ired analysis:
> >
> > trajin mdcrd5
> > vector v1 :1.N ired :1.H
> > vector v2 :2.N ired :2.H
> > ...
> > matrix ired name matired order 2
> > analyze matrix matired out ired.vec order vecs 468 orderparamfile
> order.out
> >
> > It shows the following error message:
> >
> > "
> >
> >
> > ANALYZE
> > 1> ANALYZE MATRIX: Analyzing matrix matired and dumping results to
> > ired.vec
> > Calculating 468 eigenvectors and no thermodynamic data
> > Calculating 468 eigenvectors and order parameters
> > Order parameters will be written to order.out
> >
> > Segmentation fault (core dumped)
> > "
> > Can anyone tells me what's the matter and how to fix it?
> > Thank you
> > --
> > Li Xiao
> > University of California, Irvine
> > Email: xiaoli19871216.gmail.com
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 201
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-6208 (Fax)
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Li Xiao
University of California, Irvine
Email: xiaoli19871216.gmail.com
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Mar 07 2014 - 17:00:02 PST
