Dear AMBER users,
HI, I'm trying to obtain force field parameters via Antechamber.
First, I've made a pdb file by myself from coordinate information(XYZs)
using VMD.
Then, I've converted to mol2 file and obtained 'frcmod' file via
Antechamber.
However, I get correct number of bonds but everything else is missing.
I guess the pdb file I've made is causing the trouble.
(sustiva.pdb from AMBER example works fine)
Any suggestions to make a firm pdb file from coordinate information?
I'm attaching the pdb file I've made.
Thank you.
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Hyun-Seok Kim,
Ph. D. Candidate,
Creative Research Initiatives Center for Bridging-Scaled Isogemetric Optimal
Design.,
and Department of Naval Architecture and Ocean Engineering,
College of Engineering, Seoul National University, Seoul, South Korea
(Tel.) +82- 2-880-8496
(Fax) +82- 2-883-8496
(E-mail) <mailto:y21129.snu.ac.kr> roiter85.snu.ac.kr
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- application/octet-stream attachment: EC_3.pdb
Received on Wed Mar 05 2014 - 11:00:04 PST
