[AMBER] Bond continues to break in simulation even after the bond command was used.

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From: Yip Yew Mun <yipy0005.gmail.com>
Date: Wed, 19 Feb 2014 12:04:33 +0800

Hi, I used the bond command to bond 2 fragments of a molecule together. These 2 fragments have different residue numbers and are separated by TER in the pdb file. When I ran the simulation, the bond broke. How can I resolve it.? Thanks.

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Received on Tue Feb 18 2014 - 20:30:02 PST