Alanine is fairly easy because you can leave the CB where it was before -
there is no real choice in where to put the side chain. For other
mutations, you would need to model the side chain rotatmers. Alanine
doesn't have any.
On Fri, Jan 24, 2014 at 2:24 PM, bharat lakhani <lakhbharat.gmail.com>wrote:
> Hi all
>
> Is it possible to do the binding free energy calculation if you mutate WT
> residue to all possible mutation other than ALA. I know we can do ala
> scanning.
> Thanks
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jan 24 2014 - 12:30:02 PST
