Re: [AMBER] question on how to keep the protein coordinate when adding solvateoct in xleap

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From: James Maier <jimbo.maier.gmail.com>
Date: Mon, 20 Jan 2014 15:37:48 -0500

On Thu, Jan 16, 2014 at 12:56 AM, 肖立 <xiaoli19871216.gmail.com> wrote:
>
> After I saved the reference.pdb file, I found the coordinates of the
> protein atoms didn't match the original one.

You could take a look at
http://ambermd.org/tutorials/advanced/tutorial13/Solvation.html (and other
pages in that Tutorial if relevant)
The AddToBox program may help.

James
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Received on Mon Jan 20 2014 - 13:00:02 PST