Re: [AMBER] question on how to keep the protein coordinate when adding solvateoct in xleap

From: 肖立 <xiaoli19871216.gmail.com>
Date: Wed, 15 Jan 2014 11:51:14 -0800

Thank you. But it shows this error message:
 set default nocenter on
can't parse nocenter
usage: set <container> <parameter> <object>
   or: set default <parameter> <value>

How to make it right?
Li


On Wed, Jan 15, 2014 at 11:29 AM, James Maier <jimbo.maier.gmail.com> wrote:

> Try 'set default nocenter on'
>
> James
>
>
> On Wed, Jan 15, 2014 at 2:24 PM, 肖立 <xiaoli19871216.gmail.com> wrote:
>
> > Hi, all:
> > I face a problem when adding water in tleap.
> > After typing
> > solvateoct prot TIP3PBOX 12.0
> > savepdb prot reference.pdb
> > The protein can't remain the original position.
> > Could anyone tells me if there is anyway I can add water while keep the
> > protein's original position?
> > Thanks a lot!
> >
> > --
> > Li Xiao
> > University of California, Irvine
> > Email: xiaoli19871216.gmail.com
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Li Xiao
University of California, Irvine
Email: xiaoli19871216.gmail.com
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Received on Wed Jan 15 2014 - 12:00:04 PST
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