[AMBER] Antechamber Segmentation fault (core dumped)

From: Arun Kumar Somavarapu <arunks.imtech.res.in>
Date: Mon, 13 Jan 2014 12:57:38 +0530


Dear Sir/Madam

I was trying to run antechamber for my molecule which is similar to a
polymer of 8-10 glucose units.

 antechamber -i out_hy.pdb -fi pdb -o out_hy.mol2 -fo mol2 -c bcc

sqm.out file shows --------- Calculation Completed ---------- at the

after that its giving an error of Segmentation fault (core dumped) by
dumping a file which iam attaching here.

i guess may be it is not entering in to mopac calculations, but i dont
know how to trouble shoot and move farward.

i am using Ambertools13.

can you please tell me what is the actual problem and how to resolve it.

Thanking you.

Arun Kumar Somavarapu
Project Fellow,
Dr. Pawan Gupta Lab,
Protein Science and Engineering Dept,
Institute of Microbial Tecnology,
Sec 39-A, Chandigarh - 160036.

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Received on Mon Jan 13 2014 - 00:00:02 PST
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