[AMBER] Antechamber Segmentation fault (core dumped)

From: Arun Kumar Somavarapu <arunks.imtech.res.in>
Date: Mon, 13 Jan 2014 12:57:38 +0530

 

Dear Sir/Madam

I was trying to run antechamber for my molecule which is similar to a
polymer of 8-10 glucose units.

 antechamber -i out_hy.pdb -fi pdb -o out_hy.mol2 -fo mol2 -c bcc

sqm.out file shows --------- Calculation Completed ---------- at the
end.

after that its giving an error of Segmentation fault (core dumped) by
dumping a file which iam attaching here.

i guess may be it is not entering in to mopac calculations, but i dont
know how to trouble shoot and move farward.

i am using Ambertools13.

can you please tell me what is the actual problem and how to resolve it.


Thanking you. 

-- 
Arun Kumar Somavarapu
Project Fellow,
Dr. Pawan Gupta Lab,
Protein Science and Engineering Dept,
Institute of Microbial Tecnology,
Sec 39-A, Chandigarh - 160036.

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber

Received on Mon Jan 13 2014 - 00:00:02 PST
Custom Search