[AMBER] ionic liquid simulation

From: Saeed Nasiri <s.t.nasiri.gmail.com>
Date: Sun, 12 Jan 2014 20:54:16 +0330

Dear All
I have a question about the ionic liquid simulation tutorial. why in this
tutorial there aren't any step for equilibration of density heat or
pressure (like the other tutorials)?
Are these steps essential? or only the main steps are described in the
tutorial and the mentioned steps must be done by the user?
another question about the sander and pmemd command, what is the difference
between them? Is it possible to use pmemd instead of sander in the ionic
liquid tutorial?

Your sincerely

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Received on Sun Jan 12 2014 - 09:30:02 PST
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