[AMBER] Building parameter files for a zinc finger

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From: Yip Yew Mun <yipy0005.gmail.com>
Date: Sat, 11 Jan 2014 18:47:41 +0800

Hi,

I'm currently planning to simulate a zinc finger where 4 cysteine residues are coordinated to a zinc ion. I changed the CYS to CYM. I also created a non-standard residue for the zinc ion. I wish to ask if I need to explicitly use the command "bond" to bond the SG atom of my CYM residues to the zinc ion.?

Thanks.

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Received on Sat Jan 11 2014 - 03:00:02 PST