log started: Fri Dec 27 12:02:02 2013 Log file: ./leap.log > # > # ----- leaprc for loading the ff99SB (Hornak & Simmerling) force field > # ----- this file is updated for PDB format 3 > # > # load atom type hybridizations > # > addAtomTypes { > { "H" "H" "sp3" } > { "HO" "H" "sp3" } > { "HS" "H" "sp3" } > { "H1" "H" "sp3" } > { "H2" "H" "sp3" } > { "H3" "H" "sp3" } > { "H4" "H" "sp3" } > { "H5" "H" "sp3" } > { "HW" "H" "sp3" } > { "HC" "H" "sp3" } > { "HA" "H" "sp3" } > { "HP" "H" "sp3" } > { "OH" "O" "sp3" } > { "OS" "O" "sp3" } > { "O" "O" "sp2" } > { "O2" "O" "sp2" } > { "OW" "O" "sp3" } > { "CT" "C" "sp3" } > { "CH" "C" "sp3" } > { "C2" "C" "sp3" } > { "C3" "C" "sp3" } > { "C" "C" "sp2" } > { "C*" "C" "sp2" } > { "CA" "C" "sp2" } > { "CB" "C" "sp2" } > { "CC" "C" "sp2" } > { "CN" "C" "sp2" } > { "CM" "C" "sp2" } > { "CK" "C" "sp2" } > { "CQ" "C" "sp2" } > { "CD" "C" "sp2" } > { "CE" "C" "sp2" } > { "CF" "C" "sp2" } > { "CP" "C" "sp2" } > { "CI" "C" "sp2" } > { "CJ" "C" "sp2" } > { "CW" "C" "sp2" } > { "CV" "C" "sp2" } > { "CR" "C" "sp2" } > { "CA" "C" "sp2" } > { "CY" "C" "sp2" } > { "C0" "C" "sp2" } > { "MG" "Mg" "sp3" } > { "N" "N" "sp2" } > { "NA" "N" "sp2" } > { "N2" "N" "sp2" } > { "N*" "N" "sp2" } > { "NP" "N" "sp2" } > { "NQ" "N" "sp2" } > { "NB" "N" "sp2" } > { "NC" "N" "sp2" } > { "NT" "N" "sp3" } > { "N3" "N" "sp3" } > { "S" "S" "sp3" } > { "SH" "S" "sp3" } > { "P" "P" "sp3" } > { "LP" "" "sp3" } > { "F" "F" "sp3" } > { "CL" "Cl" "sp3" } > { "BR" "Br" "sp3" } > { "I" "I" "sp3" } > { "FE" "Fe" "sp3" } > { "EP" "" "sp3" } > # glycam > { "OG" "O" "sp3" } > { "OL" "O" "sp3" } > { "AC" "C" "sp3" } > { "EC" "C" "sp3" } > } > # > # Load the main parameter set. > # > parm99 = loadamberparams parm99.dat Loading parameters: /usr/local/amber11/dat/leap/parm/parm99.dat Reading title: PARM99 for DNA,RNA,AA, organic molecules, TIP3P wat. Polariz.& LP incl.02/04/99 (UNKNOWN ATOM TYPE: HZ) (UNKNOWN ATOM TYPE: NY) (UNKNOWN ATOM TYPE: IM) (UNKNOWN ATOM TYPE: Li) (UNKNOWN ATOM TYPE: IP) (UNKNOWN ATOM TYPE: K) (UNKNOWN ATOM TYPE: Rb) (UNKNOWN ATOM TYPE: Cs) (UNKNOWN ATOM TYPE: Zn) (UNKNOWN ATOM TYPE: IB) (UNKNOWN ATOM TYPE: LP) > frcmod99SB = loadamberparams frcmod.ff99SB Loading parameters: /usr/local/amber11/dat/leap/parm/frcmod.ff99SB Reading force field modification type file (frcmod) Reading title: Modification/update of parm99.dat (Hornak & Simmerling) > # > # Load DNA/RNA libraries > # > loadOff all_nucleic94.lib Loading library: /usr/local/amber11/dat/leap/lib/all_nucleic94.lib Loading: DA Loading: DA3 Loading: DA5 Loading: DAN Loading: DC Loading: DC3 Loading: DC5 Loading: DCN Loading: DG Loading: DG3 Loading: DG5 Loading: DGN Loading: DT Loading: DT3 Loading: DT5 Loading: DTN Loading: RA Loading: RA3 Loading: RA5 Loading: RAN Loading: RC Loading: RC3 Loading: RC5 Loading: RCN Loading: RG Loading: RG3 Loading: RG5 Loading: RGN Loading: RU Loading: RU3 Loading: RU5 Loading: RUN > # > # Load main chain and terminating > # amino acid libraries (i.e. ff94 libs) > # > loadOff all_amino94.lib Loading library: /usr/local/amber11/dat/leap/lib/all_amino94.lib Loading: ALA Loading: ARG Loading: ASH Loading: ASN Loading: ASP Loading: CYM Loading: CYS Loading: CYX Loading: GLH Loading: GLN Loading: GLU Loading: GLY Loading: HID Loading: HIE Loading: HIP Loading: ILE Loading: LEU Loading: LYN Loading: LYS Loading: MET Loading: PHE Loading: PRO Loading: SER Loading: THR Loading: TRP Loading: TYR Loading: VAL > loadOff all_aminoct94.lib Loading library: /usr/local/amber11/dat/leap/lib/all_aminoct94.lib Loading: CALA Loading: CARG Loading: CASN Loading: CASP Loading: CCYS Loading: CCYX Loading: CGLN Loading: CGLU Loading: CGLY Loading: CHID Loading: CHIE Loading: CHIP Loading: CILE Loading: CLEU Loading: CLYS Loading: CMET Loading: CPHE Loading: CPRO Loading: CSER Loading: CTHR Loading: CTRP Loading: CTYR Loading: CVAL Loading: NHE Loading: NME > loadOff all_aminont94.lib Loading library: /usr/local/amber11/dat/leap/lib/all_aminont94.lib Loading: ACE Loading: NALA Loading: NARG Loading: NASN Loading: NASP Loading: NCYS Loading: NCYX Loading: NGLN Loading: NGLU Loading: NGLY Loading: NHID Loading: NHIE Loading: NHIP Loading: NILE Loading: NLEU Loading: NLYS Loading: NMET Loading: NPHE Loading: NPRO Loading: NSER Loading: NTHR Loading: NTRP Loading: NTYR Loading: NVAL > # > # Load water and ions > # > loadOff ions94.lib Loading library: /usr/local/amber11/dat/leap/lib/ions94.lib Loading: CIO Loading: Cl- Loading: Cs+ Loading: IB Loading: K+ Loading: Li+ Loading: MG2 Loading: Na+ Loading: Rb+ > loadOff solvents.lib Loading library: /usr/local/amber11/dat/leap/lib/solvents.lib Loading: CHCL3BOX Loading: DC4 Loading: MEOHBOX Loading: NMABOX Loading: PL3 Loading: POL3BOX Loading: QSPCFWBOX Loading: SPC Loading: SPCBOX Loading: SPCFWBOX Loading: SPF Loading: SPG Loading: T4E Loading: TIP3PBOX Loading: TIP3PFBOX Loading: TIP4PBOX Loading: TIP4PEWBOX Loading: TP3 Loading: TP4 Loading: TP5 Loading: TPF > HOH = TP3 > WAT = TP3 > > # > # Define the PDB name map for the amino acids and DNA. > # > addPdbResMap { > { 0 "ALA" "NALA" } { 1 "ALA" "CALA" } > { 0 "ARG" "NARG" } { 1 "ARG" "CARG" } > { 0 "ASN" "NASN" } { 1 "ASN" "CASN" } > { 0 "ASP" "NASP" } { 1 "ASP" "CASP" } > { 0 "CYS" "NCYS" } { 1 "CYS" "CCYS" } > { 0 "CYX" "NCYX" } { 1 "CYX" "CCYX" } > { 0 "GLN" "NGLN" } { 1 "GLN" "CGLN" } > { 0 "GLU" "NGLU" } { 1 "GLU" "CGLU" } > { 0 "GLY" "NGLY" } { 1 "GLY" "CGLY" } > { 0 "HID" "NHID" } { 1 "HID" "CHID" } > { 0 "HIE" "NHIE" } { 1 "HIE" "CHIE" } > { 0 "HIP" "NHIP" } { 1 "HIP" "CHIP" } > { 0 "ILE" "NILE" } { 1 "ILE" "CILE" } > { 0 "LEU" "NLEU" } { 1 "LEU" "CLEU" } > { 0 "LYS" "NLYS" } { 1 "LYS" "CLYS" } > { 0 "MET" "NMET" } { 1 "MET" "CMET" } > { 0 "PHE" "NPHE" } { 1 "PHE" "CPHE" } > { 0 "PRO" "NPRO" } { 1 "PRO" "CPRO" } > { 0 "SER" "NSER" } { 1 "SER" "CSER" } > { 0 "THR" "NTHR" } { 1 "THR" "CTHR" } > { 0 "TRP" "NTRP" } { 1 "TRP" "CTRP" } > { 0 "TYR" "NTYR" } { 1 "TYR" "CTYR" } > { 0 "VAL" "NVAL" } { 1 "VAL" "CVAL" } > { 0 "HIS" "NHIS" } { 1 "HIS" "CHIS" } > { 0 "GUA" "DG5" } { 1 "GUA" "DG3" } { "GUA" "DG" } > { 0 "ADE" "DA5" } { 1 "ADE" "DA3" } { "ADE" "DA" } > { 0 "CYT" "DC5" } { 1 "CYT" "DC3" } { "CYT" "DC" } > { 0 "THY" "DT5" } { 1 "THY" "DT3" } { "THY" "DT" } > { 0 "G" "RG5" } { 1 "G" "RG3" } { "G" "RG" } { "GN" "RGN" } > { 0 "A" "RA5" } { 1 "A" "RA3" } { "A" "RA" } { "AN" "RAN" } > { 0 "C" "RC5" } { 1 "C" "RC3" } { "C" "RC" } { "CN" "RCN" } > { 0 "U" "RU5" } { 1 "U" "RU3" } { "U" "RU" } { "UN" "RUN" } > { 0 "DG" "DG5" } { 1 "DG" "DG3" } > { 0 "DA" "DA5" } { 1 "DA" "DA3" } > { 0 "DC" "DC5" } { 1 "DC" "DC3" } > { 0 "DT" "DT5" } { 1 "DT" "DT3" } > > } > > addPdbAtomMap { > { "O5*" "O5'" } > { "C5*" "C5'" } > { "C4*" "C4'" } > { "O4*" "O4'" } > { "C3*" "C3'" } > { "O3*" "O3'" } > { "C2*" "C2'" } > { "C1*" "C1'" } > { "C5M" "C7" } > { "O2*" "O2'" } > { "H1*" "H1'" } > { "H2*1" "H2'1" } > { "H2*2" "H2'2" } > { "H2'" "H2'1" } > { "H2''" "H2'2" } > { "H3*" "H3'" } > { "H4*" "H4'" } > { "H5*1" "H5'1" } > { "H5*2" "H5'2" } > { "H5'" "H5'1" } > { "H5''" "H5'2" } > { "HO2'" "HO'2" } > { "HO5'" "H5T" } > { "HO3'" "H3T" } > { "O1'" "O4'" } > { "OA" "O1P" } > { "OB" "O2P" } > { "OP1" "O1P" } > { "OP2" "O2P" } > } > > > # > # assumed that most often proteins use HIE > # > NHIS = NHIE > HIS = HIE > CHIS = CHIE > source leaprc.gaff ----- Source: /usr/local/amber11/dat/leap/cmd/leaprc.gaff ----- Source of /usr/local/amber11/dat/leap/cmd/leaprc.gaff done >> logFile leap.log log started: Fri Dec 27 12:02:12 2013 Log file: ./leap.log >> # >> # ----- leaprc for loading the general Amber Force field. >> # This file is mostly for use with Antechamber >> # >> # load atom type hybridizations >> # >> addAtomTypes { >> { "h1" "H" "sp3" } >> { "h2" "H" "sp3" } >> { "h3" "H" "sp3" } >> { "h4" "H" "sp3" } >> { "h5" "H" "sp3" } >> { "ha" "H" "sp3" } >> { "hc" "H" "sp3" } >> { "hn" "H" "sp3" } >> { "ho" "H" "sp3" } >> { "hp" "H" "sp3" } >> { "hs" "H" "sp3" } >> { "hw" "H" "sp3" } >> { "hx" "H" "sp3" } >> { "o" "O" "sp2" } >> { "o2" "O" "sp2" } >> { "oh" "O" "sp3" } >> { "os" "O" "sp3" } >> { "ow" "O" "sp3" } >> { "c" "C" "sp2" } >> { "c1" "C" "sp2" } >> { "c2" "C" "sp2" } >> { "c3" "C" "sp3" } >> { "ca" "C" "sp2" } >> { "cc" "C" "sp2" } >> { "cd" "C" "sp2" } >> { "ce" "C" "sp2" } >> { "cf" "C" "sp2" } >> { "cg" "C" "sp2" } >> { "ch" "C" "sp2" } >> { "cp" "C" "sp2" } >> { "cq" "C" "sp2" } >> { "cu" "C" "sp2" } >> { "cv" "C" "sp2" } >> { "cx" "C" "sp2" } >> { "cy" "C" "sp2" } >> { "n" "N" "sp2" } >> { "n1" "N" "sp2" } >> { "n2" "N" "sp2" } >> { "n3" "N" "sp3" } >> { "n4" "N" "sp3" } >> { "na" "N" "sp2" } >> { "nb" "N" "sp2" } >> { "nc" "N" "sp2" } >> { "nd" "N" "sp2" } >> { "ne" "N" "sp2" } >> { "nf" "N" "sp2" } >> { "nh" "N" "sp2" } >> { "no" "N" "sp2" } >> { "s" "S" "sp2" } >> { "s2" "S" "sp2" } >> { "s3" "S" "sp3" } >> { "s4" "S" "sp3" } >> { "s6" "S" "sp3" } >> { "sh" "S" "sp3" } >> { "ss" "S" "sp3" } >> { "sx" "S" "sp3" } >> { "sy" "S" "sp3" } >> { "p2" "P" "sp2" } >> { "p3" "P" "sp3" } >> { "p4" "P" "sp3" } >> { "p5" "P" "sp3" } >> { "pb" "P" "sp3" } >> { "pd" "P" "sp3" } >> { "px" "P" "sp3" } >> { "py" "P" "sp3" } >> { "f" "F" "sp3" } >> { "cl" "Cl" "sp3" } >> { "br" "Br" "sp3" } >> { "i" "I" "sp3" } >> } >> # >> # Load the general force field parameter set. >> # >> gaff = loadamberparams gaff.dat Loading parameters: /usr/local/amber11/dat/leap/parm/gaff.dat Reading title: AMBER General Force Field for organic molecules (Version 1.4, March 2010) add. info. at the end (UNKNOWN ATOM TYPE: cz) > > loadamberprep 22CB.prepin Loading Prep file: ./22CB.prepin Loaded UNIT: UNK > loadamberparams 22CB.frcmod Loading parameters: ./22CB.frcmod Reading force field modification type file (frcmod) Reading title: remark goes here > protein = loadpdb protein-22CB.pdb Loading PDB file: ./protein-22CB.pdb Enter zPdbReadScan from call depth 0. Exit zPdbReadScan from call depth 0. Matching PDB residue names to LEaP variables. Mapped residue ASN, term: Terminal/beginning, seq. number: 0 to: NASN. (Residue 1: TRP, Nonterminal, was not found in name map.) (Residue 2: THR, Nonterminal, was not found in name map.) (Residue 3: PRO, Nonterminal, was not found in name map.) (Residue 4: GLU, Nonterminal, was not found in name map.) (Residue 5: ALA, Nonterminal, was not found in name map.) (Residue 6: ILE, Nonterminal, was not found in name map.) (Residue 7: ARG, Nonterminal, was not found in name map.) (Residue 8: GLY, Nonterminal, was not found in name map.) (Residue 9: LEU, Nonterminal, was not found in name map.) (Residue 10: VAL, Nonterminal, was not found in name map.) (Residue 11: ASP, Nonterminal, was not found in name map.) (Residue 12: GLN, Nonterminal, was not found in name map.) (Residue 13: GLU, Nonterminal, was not found in name map.) (Residue 14: LYS, Nonterminal, was not found in name map.) (Residue 15: GLY, Nonterminal, was not found in name map.) (Residue 16: LEU, Nonterminal, was not found in name map.) (Residue 17: LEU, Nonterminal, was not found in name map.) (Residue 18: ASP, Nonterminal, was not found in name map.) (Residue 19: PRO, Nonterminal, was not found in name map.) (Residue 20: ARG, Nonterminal, was not found in name map.) (Residue 21: ILE, Nonterminal, was not found in name map.) (Residue 22: TYR, Nonterminal, was not found in name map.) (Residue 23: ALA, Nonterminal, was not found in name map.) (Residue 24: ASP, Nonterminal, was not found in name map.) (Residue 25: GLN, Nonterminal, was not found in name map.) (Residue 26: SER, Nonterminal, was not found in name map.) (Residue 27: LEU, Nonterminal, was not found in name map.) (Residue 28: TYR, Nonterminal, was not found in name map.) (Residue 29: GLU, Nonterminal, was not found in name map.) (Residue 30: LEU, Nonterminal, was not found in name map.) (Residue 31: GLU, Nonterminal, was not found in name map.) (Residue 32: LEU, Nonterminal, was not found in name map.) (Residue 33: GLU, Nonterminal, was not found in name map.) (Residue 34: ARG, Nonterminal, was not found in name map.) (Residue 35: VAL, Nonterminal, was not found in name map.) (Residue 36: PHE, Nonterminal, was not found in name map.) (Residue 37: GLY, Nonterminal, was not found in name map.) (Residue 38: ARG, Nonterminal, was not found in name map.) (Residue 39: SER, Nonterminal, was not found in name map.) (Residue 40: TRP, Nonterminal, was not found in name map.) (Residue 41: LEU, Nonterminal, was not found in name map.) (Residue 42: LEU, Nonterminal, was not found in name map.) (Residue 43: LEU, Nonterminal, was not found in name map.) (Residue 44: GLY, Nonterminal, was not found in name map.) (Residue 45: HIS, Nonterminal, was not found in name map.) (Residue 46: GLU, Nonterminal, was not found in name map.) (Residue 47: SER, Nonterminal, was not found in name map.) (Residue 48: HIS, Nonterminal, was not found in name map.) (Residue 49: VAL, Nonterminal, was not found in name map.) (Residue 50: PRO, Nonterminal, was not found in name map.) (Residue 51: GLU, Nonterminal, was not found in name map.) (Residue 52: THR, Nonterminal, was not found in name map.) (Residue 53: GLY, Nonterminal, was not found in name map.) (Residue 54: ASP, Nonterminal, was not found in name map.) (Residue 55: PHE, Nonterminal, was not found in name map.) (Residue 56: LEU, Nonterminal, was not found in name map.) (Residue 57: ALA, Nonterminal, was not found in name map.) (Residue 58: THR, Nonterminal, was not found in name map.) (Residue 59: TYR, Nonterminal, was not found in name map.) (Residue 60: MET, Nonterminal, was not found in name map.) (Residue 61: GLY, Nonterminal, was not found in name map.) (Residue 62: GLU, Nonterminal, was not found in name map.) (Residue 63: ASP, Nonterminal, was not found in name map.) (Residue 64: PRO, Nonterminal, was not found in name map.) (Residue 65: VAL, Nonterminal, was not found in name map.) (Residue 66: VAL, Nonterminal, was not found in name map.) (Residue 67: MET, Nonterminal, was not found in name map.) (Residue 68: VAL, Nonterminal, was not found in name map.) (Residue 69: ARG, Nonterminal, was not found in name map.) (Residue 70: GLN, Nonterminal, was not found in name map.) (Residue 71: LYS, Nonterminal, was not found in name map.) (Residue 72: ASP, Nonterminal, was not found in name map.) (Residue 73: LYS, Nonterminal, was not found in name map.) (Residue 74: SER, Nonterminal, was not found in name map.) (Residue 75: ILE, Nonterminal, was not found in name map.) (Residue 76: LYS, Nonterminal, was not found in name map.) (Residue 77: VAL, Nonterminal, was not found in name map.) (Residue 78: PHE, Nonterminal, was not found in name map.) (Residue 79: LEU, Nonterminal, was not found in name map.) (Residue 80: ASN, Nonterminal, was not found in name map.) (Residue 81: GLN, Nonterminal, was not found in name map.) (Residue 82: CYS, Nonterminal, was not found in name map.) (Residue 83: ARG, Nonterminal, was not found in name map.) (Residue 84: HIS, Nonterminal, was not found in name map.) (Residue 85: ARG, Nonterminal, was not found in name map.) (Residue 86: GLY, Nonterminal, was not found in name map.) (Residue 87: MET, Nonterminal, was not found in name map.) (Residue 88: ARG, Nonterminal, was not found in name map.) (Residue 89: ILE, Nonterminal, was not found in name map.) (Residue 90: CYS, Nonterminal, was not found in name map.) (Residue 91: ARG, Nonterminal, was not found in name map.) (Residue 92: SER, Nonterminal, was not found in name map.) (Residue 93: ASP, Nonterminal, was not found in name map.) (Residue 94: ALA, Nonterminal, was not found in name map.) (Residue 95: GLY, Nonterminal, was not found in name map.) (Residue 96: ASN, Nonterminal, was not found in name map.) (Residue 97: ALA, Nonterminal, was not found in name map.) (Residue 98: LYS, Nonterminal, was not found in name map.) (Residue 99: ALA, Nonterminal, was not found in name map.) (Residue 100: PHE, Nonterminal, was not found in name map.) (Residue 101: THR, Nonterminal, was not found in name map.) (Residue 102: CYS, Nonterminal, was not found in name map.) (Residue 103: SER, Nonterminal, was not found in name map.) (Residue 104: TYR, Nonterminal, was not found in name map.) (Residue 105: HIS, Nonterminal, was not found in name map.) (Residue 106: GLY, Nonterminal, was not found in name map.) (Residue 107: TRP, Nonterminal, was not found in name map.) (Residue 108: ALA, Nonterminal, was not found in name map.) (Residue 109: TYR, Nonterminal, was not found in name map.) (Residue 110: ASP, Nonterminal, was not found in name map.) (Residue 111: ILE, Nonterminal, was not found in name map.) (Residue 112: ALA, Nonterminal, was not found in name map.) (Residue 113: GLY, Nonterminal, was not found in name map.) (Residue 114: LYS, Nonterminal, was not found in name map.) (Residue 115: LEU, Nonterminal, was not found in name map.) (Residue 116: VAL, Nonterminal, was not found in name map.) (Residue 117: ASN, Nonterminal, was not found in name map.) (Residue 118: VAL, Nonterminal, was not found in name map.) (Residue 119: PRO, Nonterminal, was not found in name map.) (Residue 120: PHE, Nonterminal, was not found in name map.) (Residue 121: GLU, Nonterminal, was not found in name map.) (Residue 122: LYS, Nonterminal, was not found in name map.) (Residue 123: GLU, Nonterminal, was not found in name map.) (Residue 124: ALA, Nonterminal, was not found in name map.) (Residue 125: PHE, Nonterminal, was not found in name map.) (Residue 126: CYS, Nonterminal, was not found in name map.) (Residue 127: ASP, Nonterminal, was not found in name map.) (Residue 128: LYS, Nonterminal, was not found in name map.) (Residue 129: LYS, Nonterminal, was not found in name map.) (Residue 130: ALA, Nonterminal, was not found in name map.) (Residue 131: GLY, Nonterminal, was not found in name map.) (Residue 132: ASP, Nonterminal, was not found in name map.) (Residue 133: CYS, Nonterminal, was not found in name map.) (Residue 134: GLY, Nonterminal, was not found in name map.) (Residue 135: PHE, Nonterminal, was not found in name map.) (Residue 136: ASP, Nonterminal, was not found in name map.) (Residue 137: LYS, Nonterminal, was not found in name map.) (Residue 138: ALA, Nonterminal, was not found in name map.) (Residue 139: GLU, Nonterminal, was not found in name map.) (Residue 140: TRP, Nonterminal, was not found in name map.) (Residue 141: GLY, Nonterminal, was not found in name map.) (Residue 142: PRO, Nonterminal, was not found in name map.) (Residue 143: LEU, Nonterminal, was not found in name map.) (Residue 144: GLN, Nonterminal, was not found in name map.) (Residue 145: ALA, Nonterminal, was not found in name map.) (Residue 146: ARG, Nonterminal, was not found in name map.) (Residue 147: VAL, Nonterminal, was not found in name map.) (Residue 148: ALA, Nonterminal, was not found in name map.) (Residue 149: THR, Nonterminal, was not found in name map.) (Residue 150: TYR, Nonterminal, was not found in name map.) (Residue 151: LYS, Nonterminal, was not found in name map.) (Residue 152: GLY, Nonterminal, was not found in name map.) (Residue 153: LEU, Nonterminal, was not found in name map.) (Residue 154: VAL, Nonterminal, was not found in name map.) (Residue 155: PHE, Nonterminal, was not found in name map.) (Residue 156: ALA, Nonterminal, was not found in name map.) (Residue 157: ASN, Nonterminal, was not found in name map.) (Residue 158: TRP, Nonterminal, was not found in name map.) (Residue 159: ASP, Nonterminal, was not found in name map.) (Residue 160: VAL, Nonterminal, was not found in name map.) (Residue 161: GLN, Nonterminal, was not found in name map.) (Residue 162: ALA, Nonterminal, was not found in name map.) (Residue 163: PRO, Nonterminal, was not found in name map.) (Residue 164: ASP, Nonterminal, was not found in name map.) (Residue 165: LEU, Nonterminal, was not found in name map.) (Residue 166: GLU, Nonterminal, was not found in name map.) (Residue 167: THR, Nonterminal, was not found in name map.) (Residue 168: TYR, Nonterminal, was not found in name map.) (Residue 169: LEU, Nonterminal, was not found in name map.) (Residue 170: GLY, Nonterminal, was not found in name map.) (Residue 171: ASP, Nonterminal, was not found in name map.) (Residue 172: ALA, Nonterminal, was not found in name map.) (Residue 173: ARG, Nonterminal, was not found in name map.) (Residue 174: PRO, Nonterminal, was not found in name map.) (Residue 175: TYR, Nonterminal, was not found in name map.) (Residue 176: MET, Nonterminal, was not found in name map.) (Residue 177: ASP, Nonterminal, was not found in name map.) (Residue 178: VAL, Nonterminal, was not found in name map.) (Residue 179: MET, Nonterminal, was not found in name map.) (Residue 180: LEU, Nonterminal, was not found in name map.) (Residue 181: ASP, Nonterminal, was not found in name map.) (Residue 182: ARG, Nonterminal, was not found in name map.) (Residue 183: THR, Nonterminal, was not found in name map.) (Residue 184: PRO, Nonterminal, was not found in name map.) (Residue 185: ALA, Nonterminal, was not found in name map.) (Residue 186: GLY, Nonterminal, was not found in name map.) (Residue 187: THR, Nonterminal, was not found in name map.) (Residue 188: VAL, Nonterminal, was not found in name map.) (Residue 189: ALA, Nonterminal, was not found in name map.) (Residue 190: ILE, Nonterminal, was not found in name map.) (Residue 191: GLY, Nonterminal, was not found in name map.) (Residue 192: GLY, Nonterminal, was not found in name map.) (Residue 193: MET, Nonterminal, was not found in name map.) (Residue 194: GLN, Nonterminal, was not found in name map.) (Residue 195: LYS, Nonterminal, was not found in name map.) (Residue 196: TRP, Nonterminal, was not found in name map.) (Residue 197: VAL, Nonterminal, was not found in name map.) (Residue 198: ILE, Nonterminal, was not found in name map.) (Residue 199: PRO, Nonterminal, was not found in name map.) (Residue 200: CYS, Nonterminal, was not found in name map.) (Residue 201: ASN, Nonterminal, was not found in name map.) (Residue 202: TRP, Nonterminal, was not found in name map.) (Residue 203: LYS, Nonterminal, was not found in name map.) (Residue 204: PHE, Nonterminal, was not found in name map.) (Residue 205: ALA, Nonterminal, was not found in name map.) (Residue 206: ALA, Nonterminal, was not found in name map.) (Residue 207: GLU, Nonterminal, was not found in name map.) (Residue 208: GLN, Nonterminal, was not found in name map.) (Residue 209: PHE, Nonterminal, was not found in name map.) (Residue 210: CYS, Nonterminal, was not found in name map.) (Residue 211: SER, Nonterminal, was not found in name map.) (Residue 212: ASP, Nonterminal, was not found in name map.) (Residue 213: MET, Nonterminal, was not found in name map.) (Residue 214: TYR, Nonterminal, was not found in name map.) (Residue 215: HIS, Nonterminal, was not found in name map.) (Residue 216: ALA, Nonterminal, was not found in name map.) (Residue 217: GLY, Nonterminal, was not found in name map.) (Residue 218: THR, Nonterminal, was not found in name map.) (Residue 219: THR, Nonterminal, was not found in name map.) (Residue 220: THR, Nonterminal, was not found in name map.) (Residue 221: HIS, Nonterminal, was not found in name map.) (Residue 222: LEU, Nonterminal, was not found in name map.) (Residue 223: SER, Nonterminal, was not found in name map.) (Residue 224: GLY, Nonterminal, was not found in name map.) (Residue 225: ILE, Nonterminal, was not found in name map.) (Residue 226: LEU, Nonterminal, was not found in name map.) (Residue 227: ALA, Nonterminal, was not found in name map.) (Residue 228: GLY, Nonterminal, was not found in name map.) (Residue 229: ILE, Nonterminal, was not found in name map.) (Residue 230: PRO, Nonterminal, was not found in name map.) (Residue 231: PRO, Nonterminal, was not found in name map.) (Residue 232: GLU, Nonterminal, was not found in name map.) (Residue 233: MET, Nonterminal, was not found in name map.) (Residue 234: ASP, Nonterminal, was not found in name map.) (Residue 235: LEU, Nonterminal, was not found in name map.) (Residue 236: SER, Nonterminal, was not found in name map.) (Residue 237: GLN, Nonterminal, was not found in name map.) (Residue 238: ALA, Nonterminal, was not found in name map.) (Residue 239: GLN, Nonterminal, was not found in name map.) (Residue 240: ILE, Nonterminal, was not found in name map.) (Residue 241: PRO, Nonterminal, was not found in name map.) (Residue 242: THR, Nonterminal, was not found in name map.) (Residue 243: LYS, Nonterminal, was not found in name map.) (Residue 244: GLY, Nonterminal, was not found in name map.) (Residue 245: ASN, Nonterminal, was not found in name map.) (Residue 246: GLN, Nonterminal, was not found in name map.) (Residue 247: PHE, Nonterminal, was not found in name map.) (Residue 248: ARG, Nonterminal, was not found in name map.) (Residue 249: ALA, Nonterminal, was not found in name map.) (Residue 250: ALA, Nonterminal, was not found in name map.) (Residue 251: TRP, Nonterminal, was not found in name map.) (Residue 252: GLY, Nonterminal, was not found in name map.) (Residue 253: GLY, Nonterminal, was not found in name map.) (Residue 254: HIS, Nonterminal, was not found in name map.) (Residue 255: GLY, Nonterminal, was not found in name map.) (Residue 256: SER, Nonterminal, was not found in name map.) (Residue 257: GLY, Nonterminal, was not found in name map.) (Residue 258: TRP, Nonterminal, was not found in name map.) (Residue 259: TYR, Nonterminal, was not found in name map.) (Residue 260: VAL, Nonterminal, was not found in name map.) (Residue 261: ASP, Nonterminal, was not found in name map.) (Residue 262: GLU, Nonterminal, was not found in name map.) (Residue 263: PRO, Nonterminal, was not found in name map.) (Residue 264: GLY, Nonterminal, was not found in name map.) (Residue 265: GLY, Nonterminal, was not found in name map.) (Residue 266: LEU, Nonterminal, was not found in name map.) (Residue 267: LEU, Nonterminal, was not found in name map.) (Residue 268: ALA, Nonterminal, was not found in name map.) (Residue 269: VAL, Nonterminal, was not found in name map.) (Residue 270: MET, Nonterminal, was not found in name map.) (Residue 271: GLY, Nonterminal, was not found in name map.) (Residue 272: PRO, Nonterminal, was not found in name map.) (Residue 273: LYS, Nonterminal, was not found in name map.) (Residue 274: VAL, Nonterminal, was not found in name map.) (Residue 275: THR, Nonterminal, was not found in name map.) (Residue 276: GLN, Nonterminal, was not found in name map.) (Residue 277: TYR, Nonterminal, was not found in name map.) (Residue 278: TRP, Nonterminal, was not found in name map.) (Residue 279: THR, Nonterminal, was not found in name map.) (Residue 280: GLU, Nonterminal, was not found in name map.) (Residue 281: GLY, Nonterminal, was not found in name map.) (Residue 282: PRO, Nonterminal, was not found in name map.) (Residue 283: ALA, Nonterminal, was not found in name map.) (Residue 284: ALA, Nonterminal, was not found in name map.) (Residue 285: GLU, Nonterminal, was not found in name map.) (Residue 286: LEU, Nonterminal, was not found in name map.) (Residue 287: ALA, Nonterminal, was not found in name map.) (Residue 288: GLU, Nonterminal, was not found in name map.) (Residue 289: GLN, Nonterminal, was not found in name map.) (Residue 290: ARG, Nonterminal, was not found in name map.) (Residue 291: LEU, Nonterminal, was not found in name map.) (Residue 292: GLY, Nonterminal, was not found in name map.) (Residue 293: HIS, Nonterminal, was not found in name map.) (Residue 294: THR, Nonterminal, was not found in name map.) (Residue 295: GLY, Nonterminal, was not found in name map.) (Residue 296: MET, Nonterminal, was not found in name map.) (Residue 297: PRO, Nonterminal, was not found in name map.) (Residue 298: VAL, Nonterminal, was not found in name map.) (Residue 299: ARG, Nonterminal, was not found in name map.) (Residue 300: ARG, Nonterminal, was not found in name map.) (Residue 301: MET, Nonterminal, was not found in name map.) (Residue 302: VAL, Nonterminal, was not found in name map.) (Residue 303: GLY, Nonterminal, was not found in name map.) (Residue 304: GLN, Nonterminal, was not found in name map.) (Residue 305: HIS, Nonterminal, was not found in name map.) (Residue 306: MET, Nonterminal, was not found in name map.) (Residue 307: THR, Nonterminal, was not found in name map.) (Residue 308: ILE, Nonterminal, was not found in name map.) (Residue 309: PHE, Nonterminal, was not found in name map.) (Residue 310: PRO, Nonterminal, was not found in name map.) (Residue 311: THR, Nonterminal, was not found in name map.) (Residue 312: CYS, Nonterminal, was not found in name map.) (Residue 313: SER, Nonterminal, was not found in name map.) (Residue 314: PHE, Nonterminal, was not found in name map.) (Residue 315: LEU, Nonterminal, was not found in name map.) (Residue 316: PRO, Nonterminal, was not found in name map.) (Residue 317: ALA, Nonterminal, was not found in name map.) (Residue 318: MET, Nonterminal, was not found in name map.) (Residue 319: ASN, Nonterminal, was not found in name map.) (Residue 320: ASN, Nonterminal, was not found in name map.) (Residue 321: ILE, Nonterminal, was not found in name map.) (Residue 322: ARG, Nonterminal, was not found in name map.) (Residue 323: ILE, Nonterminal, was not found in name map.) (Residue 324: TRP, Nonterminal, was not found in name map.) (Residue 325: HIS, Nonterminal, was not found in name map.) (Residue 326: PRO, Nonterminal, was not found in name map.) (Residue 327: ARG, Nonterminal, was not found in name map.) (Residue 328: GLY, Nonterminal, was not found in name map.) (Residue 329: PRO, Nonterminal, was not found in name map.) (Residue 330: ASN, Nonterminal, was not found in name map.) (Residue 331: GLU, Nonterminal, was not found in name map.) (Residue 332: ILE, Nonterminal, was not found in name map.) (Residue 333: GLU, Nonterminal, was not found in name map.) (Residue 334: VAL, Nonterminal, was not found in name map.) (Residue 335: TRP, Nonterminal, was not found in name map.) (Residue 336: ALA, Nonterminal, was not found in name map.) (Residue 337: PHE, Nonterminal, was not found in name map.) (Residue 338: THR, Nonterminal, was not found in name map.) (Residue 339: LEU, Nonterminal, was not found in name map.) (Residue 340: VAL, Nonterminal, was not found in name map.) (Residue 341: ASP, Nonterminal, was not found in name map.) (Residue 342: ALA, Nonterminal, was not found in name map.) (Residue 343: ASP, Nonterminal, was not found in name map.) (Residue 344: ALA, Nonterminal, was not found in name map.) (Residue 345: PRO, Nonterminal, was not found in name map.) (Residue 346: ALA, Nonterminal, was not found in name map.) (Residue 347: GLU, Nonterminal, was not found in name map.) (Residue 348: ILE, Nonterminal, was not found in name map.) (Residue 349: LYS, Nonterminal, was not found in name map.) (Residue 350: GLU, Nonterminal, was not found in name map.) (Residue 351: GLU, Nonterminal, was not found in name map.) (Residue 352: TYR, Nonterminal, was not found in name map.) (Residue 353: ARG, Nonterminal, was not found in name map.) (Residue 354: ARG, Nonterminal, was not found in name map.) (Residue 355: HIS, Nonterminal, was not found in name map.) (Residue 356: ASN, Nonterminal, was not found in name map.) (Residue 357: ILE, Nonterminal, was not found in name map.) (Residue 358: ARG, Nonterminal, was not found in name map.) (Residue 359: ASN, Nonterminal, was not found in name map.) (Residue 360: PHE, Nonterminal, was not found in name map.) (Residue 361: SER, Nonterminal, was not found in name map.) (Residue 362: ALA, Nonterminal, was not found in name map.) (Residue 363: GLY, Nonterminal, was not found in name map.) (Residue 364: GLY, Nonterminal, was not found in name map.) (Residue 365: VAL, Nonterminal, was not found in name map.) (Residue 366: PHE, Nonterminal, was not found in name map.) (Residue 367: GLU, Nonterminal, was not found in name map.) (Residue 368: GLN, Nonterminal, was not found in name map.) (Residue 369: ASP, Nonterminal, was not found in name map.) (Residue 370: ASP, Nonterminal, was not found in name map.) (Residue 371: GLY, Nonterminal, was not found in name map.) (Residue 372: GLU, Nonterminal, was not found in name map.) (Residue 373: ASN, Nonterminal, was not found in name map.) (Residue 374: TRP, Nonterminal, was not found in name map.) (Residue 375: VAL, Nonterminal, was not found in name map.) (Residue 376: GLU, Nonterminal, was not found in name map.) (Residue 377: ILE, Nonterminal, was not found in name map.) (Residue 378: GLN, Nonterminal, was not found in name map.) (Residue 379: LYS, Nonterminal, was not found in name map.) (Residue 380: GLY, Nonterminal, was not found in name map.) (Residue 381: LEU, Nonterminal, was not found in name map.) (Residue 382: ARG, Nonterminal, was not found in name map.) (Residue 383: GLY, Nonterminal, was not found in name map.) (Residue 384: TYR, Nonterminal, was not found in name map.) (Residue 385: LYS, Nonterminal, was not found in name map.) (Residue 386: ALA, Nonterminal, was not found in name map.) (Residue 387: LYS, Nonterminal, was not found in name map.) (Residue 388: SER, Nonterminal, was not found in name map.) (Residue 389: GLN, Nonterminal, was not found in name map.) (Residue 390: PRO, Nonterminal, was not found in name map.) (Residue 391: LEU, Nonterminal, was not found in name map.) (Residue 392: ASN, Nonterminal, was not found in name map.) (Residue 393: ALA, Nonterminal, was not found in name map.) (Residue 394: GLN, Nonterminal, was not found in name map.) (Residue 395: MET, Nonterminal, was not found in name map.) (Residue 396: GLY, Nonterminal, was not found in name map.) (Residue 397: LEU, Nonterminal, was not found in name map.) (Residue 398: GLY, Nonterminal, was not found in name map.) (Residue 399: ARG, Nonterminal, was not found in name map.) (Residue 400: SER, Nonterminal, was not found in name map.) (Residue 401: GLN, Nonterminal, was not found in name map.) (Residue 402: THR, Nonterminal, was not found in name map.) (Residue 403: GLY, Nonterminal, was not found in name map.) (Residue 404: HIS, Nonterminal, was not found in name map.) (Residue 405: PRO, Nonterminal, was not found in name map.) (Residue 406: ASP, Nonterminal, was not found in name map.) (Residue 407: PHE, Nonterminal, was not found in name map.) (Residue 408: PRO, Nonterminal, was not found in name map.) (Residue 409: GLY, Nonterminal, was not found in name map.) (Residue 410: ASN, Nonterminal, was not found in name map.) (Residue 411: VAL, Nonterminal, was not found in name map.) (Residue 412: GLY, Nonterminal, was not found in name map.) (Residue 413: TYR, Nonterminal, was not found in name map.) (Residue 414: VAL, Nonterminal, was not found in name map.) (Residue 415: TYR, Nonterminal, was not found in name map.) (Residue 416: ALA, Nonterminal, was not found in name map.) (Residue 417: GLU, Nonterminal, was not found in name map.) (Residue 418: GLU, Nonterminal, was not found in name map.) (Residue 419: ALA, Nonterminal, was not found in name map.) (Residue 420: ALA, Nonterminal, was not found in name map.) (Residue 421: ARG, Nonterminal, was not found in name map.) (Residue 422: GLY, Nonterminal, was not found in name map.) (Residue 423: MET, Nonterminal, was not found in name map.) (Residue 424: TYR, Nonterminal, was not found in name map.) (Residue 425: HIS, Nonterminal, was not found in name map.) (Residue 426: HIS, Nonterminal, was not found in name map.) (Residue 427: TRP, Nonterminal, was not found in name map.) (Residue 428: MET, Nonterminal, was not found in name map.) (Residue 429: ARG, Nonterminal, was not found in name map.) (Residue 430: MET, Nonterminal, was not found in name map.) (Residue 431: MET, Nonterminal, was not found in name map.) (Residue 432: SER, Nonterminal, was not found in name map.) (Residue 433: GLU, Nonterminal, was not found in name map.) (Residue 434: PRO, Nonterminal, was not found in name map.) (Residue 435: SER, Nonterminal, was not found in name map.) (Residue 436: TRP, Nonterminal, was not found in name map.) (Residue 437: ALA, Nonterminal, was not found in name map.) (Residue 438: THR, Nonterminal, was not found in name map.) (Residue 439: LEU, Nonterminal, was not found in name map.) (Residue 440: LYS, Nonterminal, was not found in name map.) Mapped residue PRO, term: Terminal/last, seq. number: 441 to: CPRO. Mapped residue ALA, term: Terminal/beginning, seq. number: 442 to: NALA. (Residue 443: HIS, Nonterminal, was not found in name map.) (Residue 444: PHE, Nonterminal, was not found in name map.) (Residue 445: PHE, Nonterminal, was not found in name map.) (Residue 446: LYS, Nonterminal, was not found in name map.) (Residue 447: THR, Nonterminal, was not found in name map.) (Residue 448: PHE, Nonterminal, was not found in name map.) (Residue 449: GLU, Nonterminal, was not found in name map.) (Residue 450: TRP, Nonterminal, was not found in name map.) (Residue 451: PRO, Nonterminal, was not found in name map.) (Residue 452: SER, Nonterminal, was not found in name map.) (Residue 453: LYS, Nonterminal, was not found in name map.) (Residue 454: ALA, Nonterminal, was not found in name map.) (Residue 455: ALA, Nonterminal, was not found in name map.) (Residue 456: GLY, Nonterminal, was not found in name map.) (Residue 457: LEU, Nonterminal, was not found in name map.) (Residue 458: GLU, Nonterminal, was not found in name map.) (Residue 459: LEU, Nonterminal, was not found in name map.) (Residue 460: GLN, Nonterminal, was not found in name map.) (Residue 461: ASN, Nonterminal, was not found in name map.) (Residue 462: GLU, Nonterminal, was not found in name map.) (Residue 463: ILE, Nonterminal, was not found in name map.) (Residue 464: GLU, Nonterminal, was not found in name map.) (Residue 465: GLN, Nonterminal, was not found in name map.) (Residue 466: PHE, Nonterminal, was not found in name map.) (Residue 467: TYR, Nonterminal, was not found in name map.) (Residue 468: TYR, Nonterminal, was not found in name map.) (Residue 469: ARG, Nonterminal, was not found in name map.) (Residue 470: GLU, Nonterminal, was not found in name map.) (Residue 471: ALA, Nonterminal, was not found in name map.) (Residue 472: GLN, Nonterminal, was not found in name map.) (Residue 473: LEU, Nonterminal, was not found in name map.) (Residue 474: LEU, Nonterminal, was not found in name map.) (Residue 475: ASP, Nonterminal, was not found in name map.) (Residue 476: HIS, Nonterminal, was not found in name map.) (Residue 477: ARG, Nonterminal, was not found in name map.) (Residue 478: ALA, Nonterminal, was not found in name map.) (Residue 479: TYR, Nonterminal, was not found in name map.) (Residue 480: GLU, Nonterminal, was not found in name map.) (Residue 481: ALA, Nonterminal, was not found in name map.) (Residue 482: TRP, Nonterminal, was not found in name map.) (Residue 483: PHE, Nonterminal, was not found in name map.) (Residue 484: ALA, Nonterminal, was not found in name map.) (Residue 485: LEU, Nonterminal, was not found in name map.) (Residue 486: LEU, Nonterminal, was not found in name map.) (Residue 487: ASP, Nonterminal, was not found in name map.) (Residue 488: LYS, Nonterminal, was not found in name map.) (Residue 489: ASP, Nonterminal, was not found in name map.) (Residue 490: ILE, Nonterminal, was not found in name map.) (Residue 491: HIS, Nonterminal, was not found in name map.) (Residue 492: TYR, Nonterminal, was not found in name map.) (Residue 493: PHE, Nonterminal, was not found in name map.) (Residue 494: MET, Nonterminal, was not found in name map.) (Residue 495: PRO, Nonterminal, was not found in name map.) (Residue 496: LEU, Nonterminal, was not found in name map.) (Residue 497: ARG, Nonterminal, was not found in name map.) (Residue 498: THR, Nonterminal, was not found in name map.) (Residue 499: ASN, Nonterminal, was not found in name map.) (Residue 500: ARG, Nonterminal, was not found in name map.) (Residue 501: MET, Nonterminal, was not found in name map.) (Residue 502: ILE, Nonterminal, was not found in name map.) (Residue 503: ARG, Nonterminal, was not found in name map.) (Residue 504: GLU, Nonterminal, was not found in name map.) (Residue 505: GLY, Nonterminal, was not found in name map.) (Residue 506: GLU, Nonterminal, was not found in name map.) (Residue 507: LEU, Nonterminal, was not found in name map.) (Residue 508: ALA, Nonterminal, was not found in name map.) (Residue 509: TYR, Nonterminal, was not found in name map.) (Residue 510: SER, Nonterminal, was not found in name map.) (Residue 511: GLY, Nonterminal, was not found in name map.) (Residue 512: ASP, Nonterminal, was not found in name map.) (Residue 513: GLN, Nonterminal, was not found in name map.) (Residue 514: ASP, Nonterminal, was not found in name map.) (Residue 515: LEU, Nonterminal, was not found in name map.) (Residue 516: ALA, Nonterminal, was not found in name map.) (Residue 517: HIS, Nonterminal, was not found in name map.) (Residue 518: PHE, Nonterminal, was not found in name map.) (Residue 519: ASP, Nonterminal, was not found in name map.) (Residue 520: GLU, Nonterminal, was not found in name map.) (Residue 521: THR, Nonterminal, was not found in name map.) (Residue 522: HIS, Nonterminal, was not found in name map.) (Residue 523: GLU, Nonterminal, was not found in name map.) (Residue 524: THR, Nonterminal, was not found in name map.) (Residue 525: MET, Nonterminal, was not found in name map.) (Residue 526: TYR, Nonterminal, was not found in name map.) (Residue 527: GLY, Nonterminal, was not found in name map.) (Residue 528: ARG, Nonterminal, was not found in name map.) (Residue 529: ILE, Nonterminal, was not found in name map.) (Residue 530: ARG, Nonterminal, was not found in name map.) (Residue 531: LYS, Nonterminal, was not found in name map.) (Residue 532: VAL, Nonterminal, was not found in name map.) (Residue 533: THR, Nonterminal, was not found in name map.) (Residue 534: SER, Nonterminal, was not found in name map.) (Residue 535: ASP, Nonterminal, was not found in name map.) (Residue 536: VAL, Nonterminal, was not found in name map.) (Residue 537: GLY, Nonterminal, was not found in name map.) (Residue 538: TRP, Nonterminal, was not found in name map.) (Residue 539: ALA, Nonterminal, was not found in name map.) (Residue 540: GLU, Nonterminal, was not found in name map.) (Residue 541: ASN, Nonterminal, was not found in name map.) (Residue 542: PRO, Nonterminal, was not found in name map.) (Residue 543: PRO, Nonterminal, was not found in name map.) (Residue 544: SER, Nonterminal, was not found in name map.) (Residue 545: ARG, Nonterminal, was not found in name map.) (Residue 546: THR, Nonterminal, was not found in name map.) (Residue 547: ARG, Nonterminal, was not found in name map.) (Residue 548: HIS, Nonterminal, was not found in name map.) (Residue 549: LEU, Nonterminal, was not found in name map.) (Residue 550: VAL, Nonterminal, was not found in name map.) (Residue 551: SER, Nonterminal, was not found in name map.) (Residue 552: ASN, Nonterminal, was not found in name map.) (Residue 553: VAL, Nonterminal, was not found in name map.) (Residue 554: ILE, Nonterminal, was not found in name map.) (Residue 555: VAL, Nonterminal, was not found in name map.) (Residue 556: LYS, Nonterminal, was not found in name map.) (Residue 557: GLU, Nonterminal, was not found in name map.) (Residue 558: THR, Nonterminal, was not found in name map.) (Residue 559: ALA, Nonterminal, was not found in name map.) (Residue 560: THR, Nonterminal, was not found in name map.) (Residue 561: PRO, Nonterminal, was not found in name map.) (Residue 562: ASP, Nonterminal, was not found in name map.) (Residue 563: THR, Nonterminal, was not found in name map.) (Residue 564: PHE, Nonterminal, was not found in name map.) (Residue 565: GLU, Nonterminal, was not found in name map.) (Residue 566: VAL, Nonterminal, was not found in name map.) (Residue 567: ASN, Nonterminal, was not found in name map.) (Residue 568: SER, Nonterminal, was not found in name map.) (Residue 569: ALA, Nonterminal, was not found in name map.) (Residue 570: PHE, Nonterminal, was not found in name map.) (Residue 571: ILE, Nonterminal, was not found in name map.) (Residue 572: LEU, Nonterminal, was not found in name map.) (Residue 573: TYR, Nonterminal, was not found in name map.) (Residue 574: ARG, Nonterminal, was not found in name map.) (Residue 575: ASN, Nonterminal, was not found in name map.) (Residue 576: ARG, Nonterminal, was not found in name map.) (Residue 577: LEU, Nonterminal, was not found in name map.) (Residue 578: GLU, Nonterminal, was not found in name map.) (Residue 579: ARG, Nonterminal, was not found in name map.) (Residue 580: GLN, Nonterminal, was not found in name map.) (Residue 581: VAL, Nonterminal, was not found in name map.) (Residue 582: ASP, Nonterminal, was not found in name map.) (Residue 583: ILE, Nonterminal, was not found in name map.) (Residue 584: PHE, Nonterminal, was not found in name map.) (Residue 585: ALA, Nonterminal, was not found in name map.) (Residue 586: GLY, Nonterminal, was not found in name map.) (Residue 587: GLU, Nonterminal, was not found in name map.) (Residue 588: ARG, Nonterminal, was not found in name map.) (Residue 589: ARG, Nonterminal, was not found in name map.) (Residue 590: ASP, Nonterminal, was not found in name map.) (Residue 591: VAL, Nonterminal, was not found in name map.) (Residue 592: LEU, Nonterminal, was not found in name map.) (Residue 593: ARG, Nonterminal, was not found in name map.) (Residue 594: ARG, Nonterminal, was not found in name map.) (Residue 595: ALA, Nonterminal, was not found in name map.) (Residue 596: ASP, Nonterminal, was not found in name map.) (Residue 597: ASN, Nonterminal, was not found in name map.) (Residue 598: ASN, Nonterminal, was not found in name map.) (Residue 599: LEU, Nonterminal, was not found in name map.) (Residue 600: GLY, Nonterminal, was not found in name map.) (Residue 601: PHE, Nonterminal, was not found in name map.) (Residue 602: SER, Nonterminal, was not found in name map.) (Residue 603: ILE, Nonterminal, was not found in name map.) (Residue 604: ALA, Nonterminal, was not found in name map.) (Residue 605: LYS, Nonterminal, was not found in name map.) (Residue 606: ARG, Nonterminal, was not found in name map.) (Residue 607: THR, Nonterminal, was not found in name map.) (Residue 608: ILE, Nonterminal, was not found in name map.) (Residue 609: LEU, Nonterminal, was not found in name map.) (Residue 610: LEU, Nonterminal, was not found in name map.) (Residue 611: ASP, Nonterminal, was not found in name map.) (Residue 612: ALA, Nonterminal, was not found in name map.) (Residue 613: SER, Nonterminal, was not found in name map.) (Residue 614: THR, Nonterminal, was not found in name map.) (Residue 615: LEU, Nonterminal, was not found in name map.) (Residue 616: LEU, Nonterminal, was not found in name map.) (Residue 617: SER, Nonterminal, was not found in name map.) (Residue 618: ASN, Nonterminal, was not found in name map.) (Residue 619: ASN, Nonterminal, was not found in name map.) (Residue 620: LEU, Nonterminal, was not found in name map.) (Residue 621: SER, Nonterminal, was not found in name map.) (Residue 622: MET, Nonterminal, was not found in name map.) (Residue 623: PHE, Nonterminal, was not found in name map.) Mapped residue PHE, term: Terminal/last, seq. number: 624 to: CPHE. (Residue 625: UNK, Terminal/last, was not found in name map.) Joining NASN - TRP Joining TRP - THR Joining THR - PRO Joining PRO - GLU Joining GLU - ALA Joining ALA - ILE Joining ILE - ARG Joining ARG - GLY Joining GLY - LEU Joining LEU - VAL Joining VAL - ASP Joining ASP - GLN Joining GLN - GLU Joining GLU - LYS Joining LYS - GLY Joining GLY - LEU Joining LEU - LEU Joining LEU - ASP Joining ASP - PRO Joining PRO - ARG Joining ARG - ILE Joining ILE - TYR Joining TYR - ALA Joining ALA - ASP Joining ASP - GLN Joining GLN - SER Joining SER - LEU Joining LEU - TYR Joining TYR - GLU Joining GLU - LEU Joining LEU - GLU Joining GLU - LEU Joining LEU - GLU Joining GLU - ARG Joining ARG - VAL Joining VAL - PHE Joining PHE - GLY Joining GLY - ARG Joining ARG - SER Joining SER - TRP Joining TRP - LEU Joining LEU - LEU Joining LEU - LEU Joining LEU - GLY Joining GLY - HIE Joining HIE - GLU Joining GLU - SER Joining SER - HIE Joining HIE - VAL Joining VAL - PRO Joining PRO - GLU Joining GLU - THR Joining THR - GLY Joining GLY - ASP Joining ASP - PHE Joining PHE - LEU Joining LEU - ALA Joining ALA - THR Joining THR - TYR Joining TYR - MET Joining MET - GLY Joining GLY - GLU Joining GLU - ASP Joining ASP - PRO Joining PRO - VAL Joining VAL - VAL Joining VAL - MET Joining MET - VAL Joining VAL - ARG Joining ARG - GLN Joining GLN - LYS Joining LYS - ASP Joining ASP - LYS Joining LYS - SER Joining SER - ILE Joining ILE - LYS Joining LYS - VAL Joining VAL - PHE Joining PHE - LEU Joining LEU - ASN Joining ASN - GLN Joining GLN - CYS Joining CYS - ARG Joining ARG - HIE Joining HIE - ARG Joining ARG - GLY Joining GLY - MET Joining MET - ARG Joining ARG - ILE Joining ILE - CYS Joining CYS - ARG Joining ARG - SER Joining SER - ASP Joining ASP - ALA Joining ALA - GLY Joining GLY - ASN Joining ASN - ALA Joining ALA - LYS Joining LYS - ALA Joining ALA - PHE Joining PHE - THR Joining THR - CYS Joining CYS - SER Joining SER - TYR Joining TYR - HIE Joining HIE - GLY Joining GLY - TRP Joining TRP - ALA Joining ALA - TYR Joining TYR - ASP Joining ASP - ILE Joining ILE - ALA Joining ALA - GLY Joining GLY - LYS Joining LYS - LEU Joining LEU - VAL Joining VAL - ASN Joining ASN - VAL Joining VAL - PRO Joining PRO - PHE Joining PHE - GLU Joining GLU - LYS Joining LYS - GLU Joining GLU - ALA Joining ALA - PHE Joining PHE - CYS Joining CYS - ASP Joining ASP - LYS Joining LYS - LYS Joining LYS - ALA Joining ALA - GLY Joining GLY - ASP Joining ASP - CYS Joining CYS - GLY Joining GLY - PHE Joining PHE - ASP Joining ASP - LYS Joining LYS - ALA Joining ALA - GLU Joining GLU - TRP Joining TRP - GLY Joining GLY - PRO Joining PRO - LEU Joining LEU - GLN Joining GLN - ALA Joining ALA - ARG Joining ARG - VAL Joining VAL - ALA Joining ALA - THR Joining THR - TYR Joining TYR - LYS Joining LYS - GLY Joining GLY - LEU Joining LEU - VAL Joining VAL - PHE Joining PHE - ALA Joining ALA - ASN Joining ASN - TRP Joining TRP - ASP Joining ASP - VAL Joining VAL - GLN Joining GLN - ALA Joining ALA - PRO Joining PRO - ASP Joining ASP - LEU Joining LEU - GLU Joining GLU - THR Joining THR - TYR Joining TYR - LEU Joining LEU - GLY Joining GLY - ASP Joining ASP - ALA Joining ALA - ARG Joining ARG - PRO Joining PRO - TYR Joining TYR - MET Joining MET - ASP Joining ASP - VAL Joining VAL - MET Joining MET - LEU Joining LEU - ASP Joining ASP - ARG Joining ARG - THR Joining THR - PRO Joining PRO - ALA Joining ALA - GLY Joining GLY - THR Joining THR - VAL Joining VAL - ALA Joining ALA - ILE Joining ILE - GLY Joining GLY - GLY Joining GLY - MET Joining MET - GLN Joining GLN - LYS Joining LYS - TRP Joining TRP - VAL Joining VAL - ILE Joining ILE - PRO Joining PRO - CYS Joining CYS - ASN Joining ASN - TRP Joining TRP - LYS Joining LYS - PHE Joining PHE - ALA Joining ALA - ALA Joining ALA - GLU Joining GLU - GLN Joining GLN - PHE Joining PHE - CYS Joining CYS - SER Joining SER - ASP Joining ASP - MET Joining MET - TYR Joining TYR - HIE Joining HIE - ALA Joining ALA - GLY Joining GLY - THR Joining THR - THR Joining THR - THR Joining THR - HIE Joining HIE - LEU Joining LEU - SER Joining SER - GLY Joining GLY - ILE Joining ILE - LEU Joining LEU - ALA Joining ALA - GLY Joining GLY - ILE Joining ILE - PRO Joining PRO - PRO Joining PRO - GLU Joining GLU - MET Joining MET - ASP Joining ASP - LEU Joining LEU - SER Joining SER - GLN Joining GLN - ALA Joining ALA - GLN Joining GLN - ILE Joining ILE - PRO Joining PRO - THR Joining THR - LYS Joining LYS - GLY Joining GLY - ASN Joining ASN - GLN Joining GLN - PHE Joining PHE - ARG Joining ARG - ALA Joining ALA - ALA Joining ALA - TRP Joining TRP - GLY Joining GLY - GLY Joining GLY - HIE Joining HIE - GLY Joining GLY - SER Joining SER - GLY Joining GLY - TRP Joining TRP - TYR Joining TYR - VAL Joining VAL - ASP Joining ASP - GLU Joining GLU - PRO Joining PRO - GLY Joining GLY - GLY Joining GLY - LEU Joining LEU - LEU Joining LEU - ALA Joining ALA - VAL Joining VAL - MET Joining MET - GLY Joining GLY - PRO Joining PRO - LYS Joining LYS - VAL Joining VAL - THR Joining THR - GLN Joining GLN - TYR Joining TYR - TRP Joining TRP - THR Joining THR - GLU Joining GLU - GLY Joining GLY - PRO Joining PRO - ALA Joining ALA - ALA Joining ALA - GLU Joining GLU - LEU Joining LEU - ALA Joining ALA - GLU Joining GLU - GLN Joining GLN - ARG Joining ARG - LEU Joining LEU - GLY Joining GLY - HIE Joining HIE - THR Joining THR - GLY Joining GLY - MET Joining MET - PRO Joining PRO - VAL Joining VAL - ARG Joining ARG - ARG Joining ARG - MET Joining MET - VAL Joining VAL - GLY Joining GLY - GLN Joining GLN - HIE Joining HIE - MET Joining MET - THR Joining THR - ILE Joining ILE - PHE Joining PHE - PRO Joining PRO - THR Joining THR - CYS Joining CYS - SER Joining SER - PHE Joining PHE - LEU Joining LEU - PRO Joining PRO - ALA Joining ALA - MET Joining MET - ASN Joining ASN - ASN Joining ASN - ILE Joining ILE - ARG Joining ARG - ILE Joining ILE - TRP Joining TRP - HIE Joining HIE - PRO Joining PRO - ARG Joining ARG - GLY Joining GLY - PRO Joining PRO - ASN Joining ASN - GLU Joining GLU - ILE Joining ILE - GLU Joining GLU - VAL Joining VAL - TRP Joining TRP - ALA Joining ALA - PHE Joining PHE - THR Joining THR - LEU Joining LEU - VAL Joining VAL - ASP Joining ASP - ALA Joining ALA - ASP Joining ASP - ALA Joining ALA - PRO Joining PRO - ALA Joining ALA - GLU Joining GLU - ILE Joining ILE - LYS Joining LYS - GLU Joining GLU - GLU Joining GLU - TYR Joining TYR - ARG Joining ARG - ARG Joining ARG - HIE Joining HIE - ASN Joining ASN - ILE Joining ILE - ARG Joining ARG - ASN Joining ASN - PHE Joining PHE - SER Joining SER - ALA Joining ALA - GLY Joining GLY - GLY Joining GLY - VAL Joining VAL - PHE Joining PHE - GLU Joining GLU - GLN Joining GLN - ASP Joining ASP - ASP Joining ASP - GLY Joining GLY - GLU Joining GLU - ASN Joining ASN - TRP Joining TRP - VAL Joining VAL - GLU Joining GLU - ILE Joining ILE - GLN Joining GLN - LYS Joining LYS - GLY Joining GLY - LEU Joining LEU - ARG Joining ARG - GLY Joining GLY - TYR Joining TYR - LYS Joining LYS - ALA Joining ALA - LYS Joining LYS - SER Joining SER - GLN Joining GLN - PRO Joining PRO - LEU Joining LEU - ASN Joining ASN - ALA Joining ALA - GLN Joining GLN - MET Joining MET - GLY Joining GLY - LEU Joining LEU - GLY Joining GLY - ARG Joining ARG - SER Joining SER - GLN Joining GLN - THR Joining THR - GLY Joining GLY - HIE Joining HIE - PRO Joining PRO - ASP Joining ASP - PHE Joining PHE - PRO Joining PRO - GLY Joining GLY - ASN Joining ASN - VAL Joining VAL - GLY Joining GLY - TYR Joining TYR - VAL Joining VAL - TYR Joining TYR - ALA Joining ALA - GLU Joining GLU - GLU Joining GLU - ALA Joining ALA - ALA Joining ALA - ARG Joining ARG - GLY Joining GLY - MET Joining MET - TYR Joining TYR - HIE Joining HIE - HIE Joining HIE - TRP Joining TRP - MET Joining MET - ARG Joining ARG - MET Joining MET - MET Joining MET - SER Joining SER - GLU Joining GLU - PRO Joining PRO - SER Joining SER - TRP Joining TRP - ALA Joining ALA - THR Joining THR - LEU Joining LEU - LYS Joining LYS - CPRO Added missing heavy atom: .R.A Joining NALA - HIE Joining HIE - PHE Joining PHE - PHE Joining PHE - LYS Joining LYS - THR Joining THR - PHE Joining PHE - GLU Joining GLU - TRP Joining TRP - PRO Joining PRO - SER Joining SER - LYS Joining LYS - ALA Joining ALA - ALA Joining ALA - GLY Joining GLY - LEU Joining LEU - GLU Joining GLU - LEU Joining LEU - GLN Joining GLN - ASN Joining ASN - GLU Joining GLU - ILE Joining ILE - GLU Joining GLU - GLN Joining GLN - PHE Joining PHE - TYR Joining TYR - TYR Joining TYR - ARG Joining ARG - GLU Joining GLU - ALA Joining ALA - GLN Joining GLN - LEU Joining LEU - LEU Joining LEU - ASP Joining ASP - HIE Joining HIE - ARG Joining ARG - ALA Joining ALA - TYR Joining TYR - GLU Joining GLU - ALA Joining ALA - TRP Joining TRP - PHE Joining PHE - ALA Joining ALA - LEU Joining LEU - LEU Joining LEU - ASP Joining ASP - LYS Joining LYS - ASP Joining ASP - ILE Joining ILE - HIE Joining HIE - TYR Joining TYR - PHE Joining PHE - MET Joining MET - PRO Joining PRO - LEU Joining LEU - ARG Joining ARG - THR Joining THR - ASN Joining ASN - ARG Joining ARG - MET Joining MET - ILE Joining ILE - ARG Joining ARG - GLU Joining GLU - GLY Joining GLY - GLU Joining GLU - LEU Joining LEU - ALA Joining ALA - TYR Joining TYR - SER Joining SER - GLY Joining GLY - ASP Joining ASP - GLN Joining GLN - ASP Joining ASP - LEU Joining LEU - ALA Joining ALA - HIE Joining HIE - PHE Joining PHE - ASP Joining ASP - GLU Joining GLU - THR Joining THR - HIE Joining HIE - GLU Joining GLU - THR Joining THR - MET Joining MET - TYR Joining TYR - GLY Joining GLY - ARG Joining ARG - ILE Joining ILE - ARG Joining ARG - LYS Joining LYS - VAL Joining VAL - THR Joining THR - SER Joining SER - ASP Joining ASP - VAL Joining VAL - GLY Joining GLY - TRP Joining TRP - ALA Joining ALA - GLU Joining GLU - ASN Joining ASN - PRO Joining PRO - PRO Joining PRO - SER Joining SER - ARG Joining ARG - THR Joining THR - ARG Joining ARG - HIE Joining HIE - LEU Joining LEU - VAL Joining VAL - SER Joining SER - ASN Joining ASN - VAL Joining VAL - ILE Joining ILE - VAL Joining VAL - LYS Joining LYS - GLU Joining GLU - THR Joining THR - ALA Joining ALA - THR Joining THR - PRO Joining PRO - ASP Joining ASP - THR Joining THR - PHE Joining PHE - GLU Joining GLU - VAL Joining VAL - ASN Joining ASN - SER Joining SER - ALA Joining ALA - PHE Joining PHE - ILE Joining ILE - LEU Joining LEU - TYR Joining TYR - ARG Joining ARG - ASN Joining ASN - ARG Joining ARG - LEU Joining LEU - GLU Joining GLU - ARG Joining ARG - GLN Joining GLN - VAL Joining VAL - ASP Joining ASP - ILE Joining ILE - PHE Joining PHE - ALA Joining ALA - GLY Joining GLY - GLU Joining GLU - ARG Joining ARG - ARG Joining ARG - ASP Joining ASP - VAL Joining VAL - LEU Joining LEU - ARG Joining ARG - ARG Joining ARG - ALA Joining ALA - ASP Joining ASP - ASN Joining ASN - ASN Joining ASN - LEU Joining LEU - GLY Joining GLY - PHE Joining PHE - SER Joining SER - ILE Joining ILE - ALA Joining ALA - LYS Joining LYS - ARG Joining ARG - THR Joining THR - ILE Joining ILE - LEU Joining LEU - LEU Joining LEU - ASP Joining ASP - ALA Joining ALA - SER Joining SER - THR Joining THR - LEU Joining LEU - LEU Joining LEU - SER Joining SER - ASN Joining ASN - ASN Joining ASN - LEU Joining LEU - SER Joining SER - MET Joining MET - PHE Joining PHE - CPHE Added missing heavy atom: .R.A Created a new atom named: CLAM within residue: .R Created a new atom named: CLAN within residue: .R Added missing heavy atom: .R.A Added missing heavy atom: .R.A total atoms in file: 5028 Leap added 4820 missing atoms according to residue templates: 4 Heavy 4816 H / lone pairs The file contained 2 atoms not in residue templates > saveamberparm protein protein.prmtop protein.inpcrd Checking Unit. WARNING: The unperturbed charge of the unit: -12.000000 is not zero. FATAL: Atom .R.A does not have a type. FATAL: Atom .R.A does not have a type. Failed to generate parameters Parameter file was not saved.