Dear amberists
I have nanotube pdb file with 570 atom, since there isn't any atom type for C in my pdb file,
which program should be used for building input , antechamber or leap?
This is a part of my pdb file that has one residu (CA).
best regards.
ATOM����� 1� C���� C A�� 1������ 3.917�� 0.000�� 0.000� 1.00� 0.00
ATOM����� 2� C���� C A�� 1������ 3.725�� 1.210�� 2.132� 1.00� 0.00
ATOM����� 3� C���� C A�� 1������ 3.917�� 0.000�� 1.421� 1.00� 0.00
ATOM����� 4� C���� C A�� 1������ 3.725�� 1.210�� 3.553� 1.00� 0.00
ATOM����� 5� C���� C A�� 1������ 3.917�� 0.000�� 4.263� 1.00� 0.00
ATOM����� 6� C���� C A�� 1������ 3.725�� 1.210�� 6.395� 1.00� 0.00
ATOM����� 7� C���� C A�� 1������ 3.917�� 0.000�� 5.684� 1.00� 0.00
ATOM����� 8� C���� C A�� 1������ 3.725�� 1.210�� 7.816� 1.00� 0.00
ATOM����� 9� C���� C A�� 1������ 3.917�� 0.000�� 8.526� 1.00� 0.00
ATOM���� 10� C���� C A�� 1������ 3.917�� 0.000�� 9.947� 1.00� 0.00
ATOM���� 11� C���� C A�� 1������ 3.169�� 2.302�� 0.000� 1.00� 0.00
ATOM���� 12� C���� C A�� 1������ 2.302�� 3.169�� 2.132� 1.00� 0.00
ATOM���� 13� C���� C A�� 1������ 3.169�� 2.302�� 1.421� 1.00� 0.00
ATOM���� 14� C���� C A�� 1������ 2.302�� 3.169�� 3.553� 1.00� 0.00
�
Z. Khatti, Ph.D student of Physical Chemistry,
Department of Chemistry, Iran University of Science & Technology,Tehran, Iran�
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Received on Wed Dec 25 2013 - 00:30:02 PST
