> On Dec 23, 2013, at 10:24 PM, case <case.biomaps.rutgers.edu> wrote:
>
>> On Tue, Dec 24, 2013, JAIME RUBIO MARTINEZ wrote:
>>
>> - I am using the last version of AmberTools
>> - I am trying to solvate a big protein ( dimer ) with a big box of TIP3PBOX
>> - I include the scrips and data used and also the picture of the final pdb
>
> On additional thing to try: use ambpdb to convert the rst file into a pdb
> file. Does that help? How many atoms are your final system?
This looks like the problems that occur when there are more than 100000 atoms in a PDB...
What happens if you visualize with a different format, like the prmtop or mol2?
>
> ....dac
>
>
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--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon Dec 23 2013 - 20:00:02 PST
