[AMBER] MMPBSA for single re-minimised coordinate

From: sunita gupta <sunita.bio.gmail.com>
Date: Mon, 23 Dec 2013 17:53:31 +0530

Hello,

Instead of trajectory I have a single re-minimised .crd file and I need to
take it further for energy calculation using mm_pbsa.pl implemented in
Amber12,
I am not able to get the coordinated for this re -minimized receptor and
ligand, I have only of complex. Hence I am facing trouble to put in PREFIX
parameter

Thanks

-- 
-- 
SUNITA GUPTA
Senior Research Fellow
Bioinformatics Centre
Jawaharlal Nehru University
New Delhi- 110067
Email- sunita.bio.gmail.com
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Received on Mon Dec 23 2013 - 04:30:02 PST