Re: [AMBER] Installation error

From: Jason Swails <>
Date: Wed, 30 Oct 2013 07:43:58 -0400

On Wed, Oct 30, 2013 at 4:41 AM, Dhananjay <>wrote:

> Hello,
> I got an error message while installing amber on newly installed Debian
> 7.0.
> The error appeared when I run "make install", as follows:
> o pb_augdrv.o gmresX.o interpX.o matvec3.o gen_dx_file.o aug_iccg.o
> membrane.o fftw3.o \
> ../lib/nxtsec.o ../lib/random.o -lfftw3 \
> -L/opt/amber12/lib -larpack -llapack -lblas
> /opt/amber12/lib/libfftw3.a(trig.o): In function `cexpl_sincos':
> trig.c:(.text+0x189): undefined reference to `__libm_sse2_sincos'
> /opt/amber12/lib/libfftw3.a(trig.o): In function `fftw_mktriggen':
> trig.c:(.text+0x41e): undefined reference to `__libm_sse2_sincos'
> trig.c:(.text+0x52e): undefined reference to `__libm_sse2_sincos'
> /opt/amber12/lib/libfftw3.a(dht-rader.o): In function `apply':
> dht-rader.c:(.text+0xf9): undefined reference to `_intel_fast_memset'
> [snip]

> Any suggestions please !

It looks like you are trying to use the Intel compilers, but that you don't
have the environment for those compilers set up correctly. Intel provides
sourceable scripts to set up your environment, and I'd suggest you use
those. Look at the end of this page:

An alternative is to switch to the GNU compilers.

Good luck,

Jason M. Swails
Rutgers University
Postdoctoral Researcher
AMBER mailing list
Received on Wed Oct 30 2013 - 05:00:25 PDT
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