[AMBER] Amber 12 Updater error on Arch linux

From: M. Reza Ganjalikhany <ganjalikhany.gmail.com>
Date: Wed, 30 Oct 2013 09:52:16 +0000

Dear Amber Users,

I am trying to compile Amber 12 on Arch linux (latest kernel 3.11.6), but I
get the error message from the biginig when updater tries to autoupdate
Amber as below. Also, the rest of check points pass successfully at
configuration step.

Any help will be greatly appreciated,

[root.localhost amber12]# ./configure gnu
Checking for updates...
  File "./update_amber", line 30
    except AmberUpdaterError, err:
SyntaxError: invalid syntax
Check for updates failed.
Searching for python2... Found python2.7: /usr/bin/python2.7

Obtaining the gnu suite version:
      gcc -v
The version is 4.8.2

Testing the gcc compiler:
     gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c

Testing the gfortran compiler:
     gfortran -O0 -o testp testp.f

Testing mixed C/Fortran compilation:
     gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o
     gfortran -O0 -c -o testp.f.o testp.f
     gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c.o
testp.f.o -lgfortran -w

Testing pointer size:
     gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o test_pointer_size
Detected 64 bit operating system.

Testing flex: OK

Configuring NetCDF (may be time-consuming)...

    NetCDF configure succeeded.

Checking for zlib: OK

Checking for libbz2: OK

Configuring fftw-3.3 (may be time-consuming)...

    fftw-3.3 configure succeeded.

Configuring XBLAS (may be time-consuming)...

    XBLAS configure succeeded.

Configuring MTK++ (may be time-consuming)...

    MTK++-0.2.0 configure succeeded.

The configuration file, config.h, was successfully created.

The next step is to type 'make install'

Cleaning the src directories. This may take a few moments.
Configure complete.
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Received on Wed Oct 30 2013 - 03:00:02 PDT
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