Re: [AMBER] why are pres_X, pres_Y, and pres_Z different?

From: Jose Borreguero <borreguero.gmail.com>
Date: Mon, 28 Oct 2013 11:53:01 -0400

This is my first non-cubic and dry system, yes, so I'm wading through
unknown waters :)
Thanks for your input, I hadn't thought of the pressure-volume gradient.

-Jose


On Mon, Oct 28, 2013 at 11:40 AM, David A Case <case.biomaps.rutgers.edu>wrote:

> On Mon, Oct 28, 2013, Jose Borreguero wrote:
> >
> > The system is a solid, its constituents are octa-methyl sylsesquioxanes,
> a
> > type of cage-molecule. I attach a picture of a 3x3x3 crystal.
> >
> > If this little crystal were to be surrounded by air, the normal pressure
> on
> > all of its surfaces should be the same. From this I had assumed that the
> > pressure components Px, Py, and Pz should be the same.
>
> Your variations in pressure are quite small: remember that the
> pressure-volume
> isotherms are quite steep, in that small changes in volume can lead to
> large
> changes in pressure.
>
> I'd rather expect values like you report with anything less than an
> ideal force field; (but I don't have any real experience with this sort of
> system.) [Is your system completely "dry", i.e. with no solvent
> molecules?]
>
> ....good luck....dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Oct 28 2013 - 09:00:04 PDT
Custom Search