Thanks so much Daniel Roe!
have a nice weekend!
Monica C. Concha
Physical Science Technician
Cotton Structure and Quality Research
Southern Regional Research Center
1100 Robert E. Lee Blvd.
New Orleans, LA 70124
monica.concha.ars.usda.gov
phone: 504-286-4252
-----Original Message-----
From: Daniel Roe [mailto:daniel.r.roe.gmail.com]
Sent: Friday, October 25, 2013 4:05 PM
To: AMBER Mailing List
Subject: Re: [AMBER] AmberTools13
Hi,
On Fri, Oct 25, 2013 at 2:42 PM, Concha, Monica <Monica.Concha.ars.usda.gov> wrote:
> my amber10 is in: /share/apps/amber10
> and the ambertools13 is in: /home/mconcha/amber12
>
> Warning: AMBERHOME [/share/apps/amber10] differs from expected [/home/mconcha/amber12].
> No changes will be made until this is fixed
AMBERHOME needs to point to where AmberTools 13 is; in your case this is '/home/mconcha/amber12'. So prior to running configure you need to set AMBERHOME, e.g. (in bash):
export AMBERHOME=/home/mconcha/amber12
For c-shell this is:
setenv AMBERHOME /home/mconcha/amber12
See the AmberTools 13 manual section 1.3 "Combining AmberTools13 with
Amber11 or Amber10" for more details. Jason Swails' instructions will also help (
http://jswails.wikidot.com/installing-ambertools-13-and-older-amber).
Hope this helps,
-Dan
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Oct 25 2013 - 15:00:02 PDT
