Re: [AMBER] Regarding radial distribution function

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Thu, 24 Oct 2013 07:43:44 -0600

Hi,

On Thu, Oct 24, 2013 at 5:46 AM, MOHD HOMAIDUR RAHMAN
<rahmanhpu.gmail.com> wrote:
> I am plotting Radial Distribution Function ,g(r) with help of Ptraj output
> file *carnal.xmgr* but I am getting inverted graph ( negative g(r) value
> ).

That certainly is a strange result. What version of ptraj are you
using, and what is your exact input to ptraj? Do either the
*_standard.xmgr or *_volume.xmgr graphs show similar results? What
happens if you use Cpptraj?

-Dan

-- 
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Thu Oct 24 2013 - 07:00:03 PDT
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