hi£¬all
Iused pmemd implemented in AMBER11 package to run MD£¬I followed the following procedure;
1)Minimization Stage 1 - Holding the solute fixed
2)Minimization Stage 2 - Minimizing the entire system
3)Molecular Dynamics (heating) with restraints on the solute
4)Running MD Equilibration on the whole system,but i want to know how to run MD in limiting the distance of two specified atoms?
Can anyone help me to run restricted MD?
Thank you in advance for you help.
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Received on Mon Sep 30 2013 - 07:30:04 PDT
