[AMBER] cytidine triphosphate

From: Hallel Freedman <hfreedma.ualberta.ca>
Date: Thu, 26 Sep 2013 12:46:32 -0600


The structures that I am modelling include DCP (deoxy cytidine
triphosphate) and CTP (cytidine triphosphate). I can find the contributed
parameters for ATP and GTP on the AMBER website, but I don't see anything
for CTP or DCP. Can some one please recommend to me the best way to
parameterize these cofactors? Is it necessary for me to run a quantum
calculation on the molecules myself to get ESP fit charges?

Holly Freedman
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Received on Thu Sep 26 2013 - 12:00:03 PDT
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