Grab a copy of the latest parameter file, GLYCAM-06h-1.dat. That term was
accidentally left out of 06h.
glycam.org/params
On Thu, Sep 26, 2013 at 3:08 AM, sunita gupta <sunita.bio.gmail.com> wrote:
> Hello Everyone,
>
> I am using Glycam_06 ff for parametrising four N-linked NAG attached to the
> respective ASN residues. while making topology and coordinate files I am
> getting following error and tleap fails to wite the .top and .crd files,
> *"** No torsion terms for N-Cg-Cg-Ng
> ** No torsion terms for N-Cg-Cg-Ng
> ** No torsion terms for N-Cg-Cg-Ng
> ** No torsion terms for N-Cg-Cg-Ng
> Building improper torsion parameters.
> total 1868 improper torsions applied
> Building H-Bond parameters.
> Incorporating Non-Bonded adjustments.
> Parameter file was not saved."
> *whereas the .pdb is successfully made and seems fine after visualization.
> I also checked "GLYCAM_06h.dat" file and could not find above torsion
> paramater, rather "Ng-Cg-Cg-Ng" is present. what will be the possible
> solution to this problem.
>
> Thanks
>
> --
> --
> SUNITA GUPTA
> Senior Research Fellow
> Bioinformatics Centre
> Jawaharlal Nehru University
> New Delhi- 110067
> Email- sunita.bio.gmail.com
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--
:-) Lachele
Lachele Foley
CCRC/UGA
Athens, GA USA
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Received on Thu Sep 26 2013 - 07:30:02 PDT
