On Sat, Sep 21, 2013, esther nehu wrote:
> We have installed AMBER 12, but we are facing problem in running
> simulation. I am unable to generate the nucgen file and it does not read
> the pdb files, nor can we save it to run the minimization. What should be
> done to make it work properly?
We need lots more details. The nucgen program is no longer built by default,
and I'm not sure why are trying to run it. (As a wild guess, are you looking
at an old version of the first tutorial? That used to use nucgen, but no
longer does.)
If the problem is nucgen-specific, avoid using nucgen. We retired it because
it was very obsolete. See tutorial B1 for alternate ways of building nucleic
acid structures.) If you have other problems, try to describe in detail
exactly what you did, and what the exact error messages or problems were.
...regards...dac
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Received on Sat Sep 21 2013 - 06:30:03 PDT
