Re: [AMBER] rmsd

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Tue, 17 Sep 2013 09:51:06 -0600

Hi,

If you are using VMD under windows I don't think you can load netcdf
trajectories. You will have to convert from netcdf to the ASCII
trajectory format, which you can do with cpptraj, e.g.

cpptraj -p topology.parm7 -y input.nc -x output.crd

-Dan


On Tue, Sep 17, 2013 at 9:41 AM, 김준기 <1ruwayo.gmail.com> wrote:
> Hi
>
> I load prmtop file and then load the mdcrd on of that. though you teach me,
> I can't see trajectory.
> (When I saw the mdcrd file in linux, It seem not to have a problem.)
> What should I do?
>
> Thank you
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber



-- 
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Tue Sep 17 2013 - 09:00:03 PDT
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