Re: [AMBER] rmsd

From: ر <1ruwayo.gmail.com>
Date: Tue, 17 Sep 2013 15:43:10 +0900

> Hi Daniel Roe
> I received your mail and did what you taught me.
> It is very helpful to me. Thank you for your teaching.
>
> But I have a problem. I can't see result(mdcrd file) calculated by
amber11 in using VMD.
> This is mdin file. Could you tell me what is problem?
> Equilibration
> &cntrl
> irest=0, ntx=1,
> nstlim=100, dt=0.002,
> irest=0, ntt=3, gamma_ln=1.0,
> temp0=XXXXX, ig=RANDOM_NUMBER,
> ntc=2, nscm=1000,
> ntb=0, igb=1,
> cut=15,
> ntpr=100, ntwx=100, ntwr=100, ntwe=100,
> nmropt=0,
> numexchg=250000,
> /
> &wt TYPE='END'
> /
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Received on Tue Sep 17 2013 - 00:00:02 PDT
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