Dear All,
We have just installed RACK server in our lab, in which we have installed AMBER software in
parallel. Server shows that it has 160 cores. When I run simulation job, I give np 160,
equilibration job crashed. Then I tried using np 8, then it worked, then again I increased np to
32, it is running fine, but for 4ns production run for 321 amino acid, it is taking 72 hours to
finish. When I used to run it on 8 cores on our previous workstation, it used to take same time.
I tried on server np 80 also, still it shows more than 70 hours to finish.
Please suggest, if I am missing something. and how to utilize all the cores for faster simulation
runs.
Thanks in advance.
Regards
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Received on Fri Sep 13 2013 - 21:30:03 PDT
