[AMBER] missing loop

From: Fabian Glaser <fglaser.technion.ac.il>
Date: Tue, 3 Sep 2013 17:05:53 +0300


I am interest in using amber to study the protein in PDB 3cio. But it has a 12 aa loop missing, which cannot be modeled using similar structures. I wonder what would be the best strategy to model this loop, or alternatively how to simulate this protein dynamics.

Thanks a lot,

Fabian Glaser,
Technion, Israel

Fabian Glaser, PhD
Bioinformatics Knowledge Unit,
The Lorry I. Lokey Interdisciplinary
Center for Life Sciences and Engineering

Technion - Israel Institute of Technology
Haifa 32000, ISRAEL
Tel: +972 4 8293701
Fax: +972 4 8225153

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Received on Tue Sep 03 2013 - 07:30:03 PDT
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