[AMBER] updates for amber12 bugfix18 & 19 fail

From: Vijay Manickam Achari <vjrajamany.yahoo.com>
Date: Tue, 3 Sep 2013 09:08:15 +0100 (BST)

I can not compile amber12 since I get update failure during installation..
Could anyone help?

The message I get as below:
[root.glycogpu amber12]# ./configure -mpi gnu
Checking for updates...
Checking for available patches online. This may take a few seconds...

Available AmberTools 13 patches:

No patches available

Available Amber 12 patches:

bugfix.18.bz2 (modifies No information available)
Released on No information available (written by No information available)
No information available

bugfix.19 (modifies pmemd.cuda)
Released on Aug. 15, 2013 (written by Ross Walker, Scott Le Grand, and Ben Madej)
Minor fixes and updates to the GPU code:
1. Adds support for CUDA 5.5. - via accompanying AMBERTools 13 bugfix.16.
2. Disables NMROPT on multiple GPUs due to unfixed bugs in the MPI version
at present.
3. Enables support for GTX-Titan and GTX780 GPUs and checks that the minimum
required driver version of v325.15 is installed.
4. Fix spurious crash with kNLBuildNeighborListOrthogonal16_kernel
for systems containing large vacuum bubbles or very low density.
5. Updates GPU code citation.
6. Adds missing test case output for GPU Jarinski Tests.
7. Updates GPU code to v12.3.1

There are patches available. Do you want to apply them now? [y/n] (Recommended Y)
Preparing to apply updates... please wait.
No new updates available for AmberTools 13
Applying Amber 12/bugfix.18
PatchingError: .patches/Amber_Unapplied_Patches/bugfix.18 failed to apply. No changes made from this patch
Automatic patching failed! Check the errors before re-configuring
[root.glycogpu amber12]# ll

Advance thanks
AMBER mailing list
Received on Tue Sep 03 2013 - 01:30:04 PDT
Custom Search