Re: [AMBER] About SNB range in statistics command in cpptraj

From: arundhati dutta <arundhatidut.gmail.com>
Date: Mon, 26 Aug 2013 11:20:23 -0500

Hello,
Thanks for the help.
Arundhati


On Mon, Aug 26, 2013 at 10:51 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:

> Hi,
>
> On Mon, Aug 26, 2013 at 8:58 AM, arundhati dutta <arundhatidut.gmail.com>
> wrote:
> > O4'-C1'-NX-CX, SNB range is 200-300
> >
> > I didn't understand what is the meaning of SNB range.
>
> This has to do with the observed range of nucleic acid torsions in RNA
> structures. See:
>
> Nucleic Acids Res. 2004 Mar 11;32(5):1666-77. Print 2004.
> RNA conformational classes.
> Schneider B, Morávek Z, Berman HM.
>
> http://www.ncbi.nlm.nih.gov/pubmed/15016910
>
> See in particular figure 2. Hope this helps,
>
> -Dan
>
> >
> > --
> > *A.Dutta (PPG INSTITUTE OF TECH ,MCA)
> > *
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>
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 201
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-9119 (Fax)
>
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>



-- 
*A.Dutta (PPG INSTITUTE OF TECH ,MCA)
*
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Received on Mon Aug 26 2013 - 09:30:02 PDT
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