[AMBER] RMSD calculation followed by superimposition

From: <moitrayee.mbu.iisc.ernet.in>
Date: Thu, 15 Aug 2013 08:04:39 +0530 (IST)

Dear All,
I want to do the following for an oligomer.

I want to superimpose each snapshot on 1 subunit and calculate time dependent
RMSD in the two neighboring subunits. Is there a way I can use ptraj to do this
?

I would eagerly look forward to your reply.

Thanks a lot and Best Regards,
Moitrayee 


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Received on Wed Aug 14 2013 - 19:30:02 PDT
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