Re: [AMBER] Parameter file is not saved - AMBER!

From: David A Case <case.biomaps.rutgers.edu>
Date: Mon, 5 Aug 2013 14:11:25 -0400

On Mon, Aug 05, 2013, Krati Sharma wrote:
>
> FATAL: Atom .R<LY 703>.A<N 1> does not have a type.
> FATAL: Atom .R<LY 703>.A<CA 2> does not have a type.
> FATAL: Atom .R<LY 703>.A<CB 3> does not have a type.
> FATAL: Atom .R<LY 703>.A<CG 4> does not have a type.
> FATAL: Atom .R<LY 703>.A<CD 5> does not have a type.
> FATAL: Atom .R<LY 703>.A<CE 6> does not have a type.
> FATAL: Atom .R<LY 703>.A<NZ 7> does not have a type.
> FATAL: Atom .R<LY 703>.A<C 8> does not have a type.
> FATAL: Atom .R<LY 703>.A<O 9> does not have a type.
> FATAL: Atom .R<AS 704>.A<N 1> does not have a type

Dan's response is correct, but given these atom names, it seems likely(?)
that residue 703 is supposed to be "LYS" not "LY". That might be a simpler
fix, if that guess is correct.

Note that residue 704 also needs to be fixed. Check to see if it is supposed
to be something like ASP or ASN, rather than "AS".

...dac


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Received on Mon Aug 05 2013 - 11:30:04 PDT
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