Hi,
On Fri, Aug 2, 2013 at 8:54 AM, Wang Chern Hoe (Dr) <WangCH.ntu.edu.sg> wrote:
> [trajin reduce_ttqy_wat_md3.mdcrd]
> NETCDF Error: NetCDF: Index exceeds dimension bound
> Error: Getting cell lengths.
> Error: Could not set up reduce_ttqy_wat_md3.mdcrd for reading.
> Error: trajin: Could not set up trajectory.
This error indicates there is something strange about the box
coordinates in your NetCDF trajectory. Is this trajectory directly
from sander or pmemd MD, or has it been processed in some way already?
What is the output of 'ncdump -h reduce_ttqy_wat_md3.mdcrd'? You can
find the 'ncdump' program in your $AMBERHOME/bin directory.
-Dan
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Fri Aug 02 2013 - 08:30:03 PDT
