Hi,
These two messages make me think that somehow your amber12 directory
has become corrupted:
On Thu, Aug 1, 2013 at 8:23 PM, fatahiya <fatahiyamohdtap.yahoo.com> wrote:
> Downloading AmberTools 13/update.8 (1.15 KB)
> Applying AmberTools 13/update.8
> /home/shima/amber12/updateutils/patch.py:314: PatchingWarning: Previously applied patch detected. Skipping.
> PatchingWarning)
> ./configure: line 56: ./configure2: No such file or directory
In particular, there absolutely should be a configure2 file in
$AMBERHOME/AmberTools/src/. Did you unpack AmberTools13 into an
existing amber12 directory? That *might* cause this strange behavior.
My advice is to start from a clean AmberTools13 installation and
proceed from there.
-Dan
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Thu Aug 01 2013 - 22:00:02 PDT
