Hi,
>From your error log I believe this may be a problem with your C++
header files not being 100% compatible with the Intel compilers;
specifically that the GNU C++ headers on your system use C++0x
features that the older versions of the Intel compiler do not support.
You *might* be able to work around this by installing an older version
of the gnu headers (maybe 4.3 would work?) and pointing GXX_INCLUDE to
there, but in my opinion that's probably a lot of work for no obvious
benefit. I would say that unless you absolutely need MTKPP just
disable it by passing the '-nomtkpp' flag to configure.
Hope this helps,
-Dan
On Mon, Jun 24, 2013 at 6:28 PM, Ismail, Mohd F. <farid.ou.edu> wrote:
> Dr. Roe,
>
> Here is my system specs:
> AMD Opteron Magny-cours 8-core
> CentOS 6.4
> Intel Compiler 11.1 073
>
> What I did:
> unpack AT1.5
> set AMBERHOME
> cd $AMBERHOME
> export PATH="AMBERHOME/bin:$PATH"
> apply patch (patch -p0 -N < bugfix.all)
> cd to $AMBERHOME/AmberTools/src
> ./configure intel
> make serial
>
> The compile will stop at compiling MTK+. I have included the error log and the config.h generated. The error log is truncated to reduce the size.
>
>
> *******************************
> Mohd Farid Ismail
> Graduate Student
> Dept. of Chemistry/Biochemistry
> University of Oklahoma
> Norman 73019
>
> ________________________________________
> From: Daniel Roe [daniel.r.roe.gmail.com]
> Sent: Sunday, June 23, 2013 10:10 PM
> To: AMBER Mailing List
> Subject: Re: [AMBER] Actual Intel Compiler Version Used
>
> Hi,
>
> On Sun, Jun 23, 2013 at 7:47 PM, Ismail, Mohd F. <farid.ou.edu> wrote:
>> Hi, can anyone let me know what was the actual version of intel compiler used for Amber11 and Amber12? And AmberTools 1.5 and AT12/13?
>
> Amber is tested with a variety of compiler suites and versions. I was
> just able to compile AmberTools 1.5 with Intel compilers version 11.1
> (20090511). Could you post your exact configuration, the flags you
> provided to configure, and the error you received?
>
> -Dan
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 201
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-9119 (Fax)
>
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Mon Jun 24 2013 - 21:00:04 PDT
