kanin,
try packmol - www.ime.unicamp.br/~martinez/packmol/
good luck,
igor
Igor Marques, *Researcher*
MSc in Pharmaceutical Biomedicine
BSc in Biomedical Sciences
Molecular Modeling Group – University of Aveiro
http://molecular-modeling.dq.ua.pt/
Mobile phone: +351 918 567 294
Phone: +351 234 370 200 Ext: 22102
Campus Universitario de Santiago
Edificio III
3810-193 Aveiro
Portugal
On 6 June 2013 10:53, Kanin Wichapong <kanin.wichapong.gmail.com> wrote:
> Dear Amber Users,
>
> I tried to add solvents in my system which is a membrane protein. However,
> when I tried to use the solvatebox command it seems that waters are added
> in all direcetions (x,y,z) and also in the membrane.
>
> Are there any way to add solvent only in one-direction (z-axis - above and
> under the membrane) and also that waters should not go in the membrane?
>
> Best Regards,
> Kanin Wichapong
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Received on Thu Jun 06 2013 - 03:00:02 PDT
