Hi Dilraj,
Check out the "rms2d" analysis command in cpptraj (AmberTools13).
Previous versions of cpptraj and ptraj also support it, but I'm not sure
if it was documented.
--Niel
________________________________________
From: dilrajl.bii.a-star.edu.sg [dilrajl.bii.a-star.edu.sg]
Sent: Tuesday, May 28, 2013 6:42 AM
To: amber.ambermd.org
Subject: [AMBER] RMSD calculation between trajectories
Dear Amber Users,
I have two separate trajectories and I want to
compute the RMSD between each frame of the first trajectory with every
frame of the second trajectory.
Is there any means by which one can do this in ptraj or cpptraj?
Or if someone has tried this before, could you please direct in
performing this analysis.
Thank you.
Dilraj.
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Received on Tue May 28 2013 - 06:00:05 PDT
