Re: [AMBER] Open MPI failure

From: David Winogradoff <dwino218.gmail.com>
Date: Mon, 6 May 2013 13:25:29 -0400

Hey Dan,

Thanks for the quick response. I find this warning puzzling because my
.bashrc.mine file has the line "tap -q openmpi143-gnu" currently, and had
this line when I configured amber 12.

If "compiled for a different version" isn't the case, that leaves us with
"a missing symbol," of which I must admit I do not understand the meaning.

-David


On Mon, May 6, 2013 at 12:30 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:

> Hi,
>
> On Mon, May 6, 2013 at 10:18 AM, David Winogradoff <dwino218.gmail.com>
> wrote:
> > [compute-f15-25.deepthought.umd.edu:16922] mca: base: component_find:
> > unable to open
> > /cell_root/software/openmpi/1.4.3/gnu/sys/lib/openmpi/mca_btl_openib:
> > perhaps a missing symbol, or compiled\
> > for a different version of Open MPI? (ignored)
>
> Maybe this could be the problem? Make sure you are using the same MPI
> framework to run the executable that you used when compiling.
>
> -Dan
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 201
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-9119 (Fax)
>
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Received on Mon May 06 2013 - 10:30:03 PDT
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