pdb format for B1.pdb was also generated using babel. Attached is the pdb
in pdb format.
Thanks
On 6 May 2013 20:45, Ashutosh Shandilya <izerokelvin.gmail.com> wrote:
> Dear Users
> I have a modified peptide of three residue when I generate 3d coordinates
> from different softwares they are different. Both the structures are quite
> different from one another. I did minimization using sander it gave some
> output but with other structure it gives error saying "*the best APS is
> not zero, bonds involved by this atom are frozen"*. so I cant compare
> them. Attached are the pdb files with two different softwares.
>
>
> One more question how to define which one of them is the right structure?
>
>
> Thanks
> Ashutosh
>
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Received on Mon May 06 2013 - 08:30:06 PDT
