No it doesn't
On Sat, May 4, 2013 at 10:07 PM, Jason Swails <jason.swails.gmail.com>wrote:
> On Sat, May 4, 2013 at 8:16 PM, Chinthaka Ratnaweera <cnr88.msstate.edu
> >wrote:
>
> > When I directly used gnu compilers it gave the following error. Then as
> > instructed I used '-nofftw3' flag. This shows the gcc version.
> >
> > ......
> > Checking for updates...
> > Checking for available patches online. This may take a few seconds...
> >
> > Available AmberTools 13 patches:
> >
> > No patches available
> > Searching for python2... Found python2.5:
> > /usr/local/MGLTools-1.5.1/mgltools_i86Linux2_1.5.1/bin/python2.5
> >
> > Obtaining the gnu suite version:
> > gcc -v
> > The version is 4.1.2
> > ERROR: RISM and PBSA FFT solver require version 4.3 or higher of the GNU
> > compiler.
> > Please re-run configure with the '-nofftw3' flag to use this
> > compiler:
> > ./configure -nofftw3 gnu
> >
> >
> >
> .........................................................................................
> >
> > I commented MKL_HOME environment variable, but still the compilation is
> not
> > complete.. Final part of the error msg are as follows.
> >
> > -- Warning: Obsolete: arithmetic IF statement at (1)
> > In file pubfft.F90:290
> >
> > if (nr) 101,105,101
> > 1
> > Warning: Obsolete: arithmetic IF statement at (1)
> > gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ
> > -DHASBZ2 -I/home/srg/nadun/ambertools/amber12/include -o cluster.o
> > cluster.c
> > gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ
> > -DHASBZ2 -I/home/srg/nadun/ambertools/amber12/include -o
> clusterLib.o
> > clusterLib.c
> > gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ
> > -DHASBZ2 \
> > -o rdparm main.o rdparm.o dispatch.o help.o utility.o
> > second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o
> torsion.o
> > mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o
> > actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o
> > -L/home/srg/nadun/ambertools/amber12/lib -lpdb -larpack -llapack -lblas
> > -lgfortran -w -L/home/srg/nadun/ambertools/amber12/lib -lnetcdf -lm
> > /usr/bin/ld: cannot find -lnetcdf
> >
>
> Is there a file /home/srg/nadun/ambertools/amber12/lib/libnetcdf.a ?
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Chinthaka Nadun Ratnaweera
Hand Lab Rm 1126
Mississippi State University
310 Presidents Circle
Starkville, MS 39762
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Received on Sat May 04 2013 - 21:00:03 PDT
