[AMBER] RMSD with ptraj fit vs unfit

From: HIMANSHU JOSHI <himanshuphy87.gmail.com>
Date: Wed, 27 Mar 2013 22:47:38 +0530

Dear friends,

I am using ptraj to calculate rmsd for amber trajectories.
I am getting less rmsd with fit compared to
nofit. I want to know that what algorithm rms follow
to do this fitting of trajectories.

Looking forward for your kind suggestions.

*With Regards,
Graduate Scholar, Center for Condense Matter Theory
Department of Physics IISc.,Bangalore India 560012*
ॐ सर्वे भवन्तु सुखिनः सर्वे सन्तु निरामयः।
सर्वे भद्रणिपश्यन्तु मा कश्चिद्दुःख भाग भवेत्॥
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Received on Wed Mar 27 2013 - 10:30:03 PDT
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