Dear friends,
I am using ptraj to calculate rmsd for amber trajectories.
I am getting less rmsd with fit compared to
nofit. I want to know that what algorithm rms follow
to do this fitting of trajectories.
Looking forward for your kind suggestions.
--
*With Regards,
HIMANSHU JOSHI
Graduate Scholar, Center for Condense Matter Theory
Department of Physics IISc.,Bangalore India 560012*
ॐ सर्वे भवन्तु सुखिनः सर्वे सन्तु निरामयः।
सर्वे भद्रणिपश्यन्तु मा कश्चिद्दुःख भाग भवेत्॥
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Received on Wed Mar 27 2013 - 10:30:03 PDT
