Re: [AMBER] aMD simulations in AMBER 12 (GPU version) update

From: Jason Swails <jason.swails.gmail.com>
Date: Thu, 21 Mar 2013 20:55:56 -0400

Go to $AMBERHOME and run configure again. After it's done, run the command:

./patch_amber.py --patch-level

Make sure that 35 patches have been applied to AmberTools and 15 have been
applied to Amber. Then recompile.

HTH,
Jason

On Thu, Mar 21, 2013 at 8:20 PM, Neha Gandhi <n.gandhiau.gmail.com> wrote:

> How do I update AMBER12.0 to version 12.1 or 12.2?
>
> On 22 March 2013 00:42, Daniel Roe <daniel.r.roe.gmail.com> wrote:
>
> > Hi,
> >
> > On Thu, Mar 21, 2013 at 4:26 AM, Neha Gandhi <n.gandhiau.gmail.com>
> wrote:
> > > |--------------------- INFORMATION ----------------------
> > > | GPU (CUDA) Version of PMEMD in use: NVIDIA GPU IN USE.
> > > | Version 12.0
> > > |
> > > | 03/19/2012
> > > |
> >
> > You should first try updating your Amber installation before
> > continuing; I believe the version should read "12.1".
> >
> > -Dan
> >
> > --
> > -------------------------
> > Daniel R. Roe, PhD
> > Department of Medicinal Chemistry
> > University of Utah
> > 30 South 2000 East, Room 201
> > Salt Lake City, UT 84112-5820
> > http://home.chpc.utah.edu/~cheatham/
> > (801) 587-9652
> > (801) 585-9119 (Fax)
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Regards,
> Dr. Neha S. Gandhi,
> Curtin Research Fellow,
> School of Biomedical Sciences,
> Curtin University,
> Perth GPO U1987
> Australia
> LinkedIn
> Research Gate
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Mar 21 2013 - 18:00:02 PDT
Custom Search