[AMBER] how can we plot energy profile for REMD?

From: Albert <mailmd2011.gmail.com>
Date: Thu, 21 Mar 2013 09:51:11 +0100

Dear:

  I found a REMD paper based on Amber:

Biophys J. <http://www.ncbi.nlm.nih.gov/pubmed/22098751#> 2011 Nov
16;101(10):2516-24. doi: 10.1016/j.bpj.2011.10.016. Epub 2011 Nov 15.

http://www.ncbi.nlm.nih.gov/pubmed/22098751

In this figure 5
(http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218345/bin/gr5.jpg) the
author showd a free-energy surface plot. I am just wondering how can we
make such kind of plot after we finished the REMD in amber?

thank you very much
best
Albert
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Mar 21 2013 - 02:00:03 PDT
Custom Search