[AMBER] how can we plot energy profile for REMD?
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From
: Albert <
mailmd2011.gmail.com
>
Date
: Thu, 21 Mar 2013 09:51:11 +0100
Dear:
I found a REMD paper based on Amber:
Biophys J. <
http://www.ncbi.nlm.nih.gov/pubmed/22098751
#> 2011 Nov
16;101(10):2516-24. doi: 10.1016/j.bpj.2011.10.016. Epub 2011 Nov 15.
http://www.ncbi.nlm.nih.gov/pubmed/22098751
In this figure 5
(
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218345/bin/gr5.jpg
) the
author showd a free-energy surface plot. I am just wondering how can we
make such kind of plot after we finished the REMD in amber?
thank you very much
best
Albert
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Received on
Thu Mar 21 2013 - 02:00:03 PDT
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